Azospirillum argentinense: D3093_24230
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Entry
D3093_24230 CDS
T08628
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aare
Azospirillum argentinense
Pathway
aare03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aare00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D3093_24230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aare03400
]
D3093_24230
Enzymes [BR:
aare01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3093_24230
DNA repair and recombination proteins [BR:
aare03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D3093_24230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_30
AAA_33
SecA_DEAD
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QCN98360
UniProt:
A0A4D8PMI5
LinkDB
All DBs
Position
p2:complement(350533..353565)
Genome browser
AA seq
1010 aa
AA seq
DB search
MLGQRAAAIAALSRPTKGTGRLVLATAEAALQRLPPPDAWPDVALFIATDTLYDEEAWRK
RLIAGGYILDERIDEPGEAAFRGSVVEIFPGDADRPIRCDIVDDRVARIRTFDPASQRST
GDCDRITVHPVTEIPAAPEIVARLIQGLEGRRDPMAAGLAEELAAGRRPYAFERLLPLAY
DRLPSVLELLADSPIVIDEGVGDRLEAWFDELEDADASAMHLDRDAWETGLRERVVLTLE
PDGQASSSEAPAVSERTLPRLAGEQIAAGESVIIAAANAADAARMAERVAATTGRPVPVL
DRWPVDGPPVTPAALVLRVAAGFTFDGVTVLAQRPRPEGGTGPAAPLAPADLSCDDLAVH
LDYGIGAVRGLDTVETGGQPEDVLVMEYARENRLLVPAADLDRVWRYGSSDARVALDGLK
GGNWIARRAELEREIGRTAKSLVRQAKRRARTKAPVIAPPAGPMRRMAARFPYEETAGQR
RAITAVMAELASGRPMDHLVCADVGYGKTEVALRAAAAVAFTGRQVAVLAPTSVLARQHL
EVFRRRLAGLGLRIEPLTGGMAASAAKTVREGLADGSVAIAVGTHALLSKTVRFADLALV
VVDEEQRFGTVQKRALARLSAGVHCLALSATPVPRTLQGALAGLRGVSVIDTPPVRRRPV
RTRVAPYDPSVLRSALMREKARGGQSFCVAPRIADLPALEAEVRALAPGLSIAVAHGRLP
VAELDQVMVDVAEGTVDVLVSTPIIETGIDIPRANTIVIRRPDLFGLGQLHQLRGRVGRG
GAQAYAYLLTDPDTPLGERTERRLGSLEAIESLGGGFALSLLDLDQRGAGDLLGTDQSGH
LRLVGTELYQHLLARALAGAEMDDAPELRLGVPQTIPAAYLPEEDLRIGLHRRLSRLRDE
TAAEPLREEIEDRFGPLPEEVELLLATAALRARCRRLGVAALVAGPSGVSLTLNDTPCRA
VREAALERLWTGQVRRTDDRLVFALSAEGPSEILNNARTVLDQLPPVGTA
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgggcagcgcgccgccgccatcgccgccttgtcccgaccgaccaaaggcaccggg
cggctggttctggcgaccgccgaggcggcgctgcaacgtcttccgccccccgatgcctgg
cccgacgtcgcgctgttcatcgcgacggacaccctctatgacgaggaagcttggcggaag
cgcctgattgccggcggctacatcctcgacgaaaggatcgacgaaccgggggaggccgcg
ttccgcggttccgtcgtggagatctttccgggggacgccgatcgccccatccgctgcgac
atcgtcgatgaccgggtcgcacggatccggaccttcgatccggcaagccagcgctcgacg
ggcgattgcgaccggatcaccgttcatccggtgaccgaaatcccggcggcaccggagatc
gtcgcacggttgatccaagggctggagggtcgcagggacccgatggccgcggggctcgcg
gaggaactcgccgccggacgacgcccctacgccttcgagcgcctgctgcccctggcctac
gaccgcttgccgagcgtgcttgagcttctcgccgacagtcccatcgtcattgacgagggg
gttggagaccggctggaggcgtggttcgacgagttggaggacgccgacgcatccgccatg
cacctcgaccgcgacgcgtgggagacagggttgcgggagcgcgtggttctgaccctggag
cccgacgggcaagcctcgtccagcgaggcgccggcggtgtccgaacgcaccctcccccgc
ctcgccggagagcagattgccgcgggtgaatccgtgatcattgccgccgcgaacgccgcc
gacgcggccaggatggcggagcgggtggcggcgacgactggtcggccggtgccggtgctc
gaccgttggccggtggatggcccccccgtgacgccggcagccctggtgctccgggtcgcg
gcgggcttcacgttcgacggcgtgacggtgctcgcccaacgtccccgcccggaaggcgga
accggcccggccgccccgctggcacccgccgacctgtcgtgcgacgatcttgccgtccat
ctcgactacgggatcggtgcggtgcgcgggctcgacacggttgagaccggaggccagccg
gaagacgttctggtgatggagtatgcccgcgagaatcggctcctggtgccggcggccgac
ctcgaccgcgtgtggcgctacggcagcagcgacgcccgggtggcgctcgatgggctcaag
ggtggaaattggatcgcccgccgtgcggagttggagcgcgagatcggccgaaccgcgaaa
agccttgtgcgccaggccaagcgccgggcccgcacgaaagcccccgtgatcgcgccgccg
gccggaccgatgcggcgcatggccgcccgcttcccctacgaggagaccgcaggccagcgg
cgcgccatcaccgccgtgatggccgaactcgccagcgggcgccccatggaccatctggtc
tgcgccgacgtcggctacggcaagaccgaagtggcgttgcgcgccgcggcggcggtcgcc
ttcaccggccggcaggttgccgttcttgctccgaccagcgtgctcgcccgccagcacctg
gaggtgttccgacggcggctggccggtttgggcctgcgcatcgagccgttgaccggcggc
atggcggcgtcggccgcaaaaaccgtgcgcgaaggcctcgccgacggatcggtggcgatc
gcggtcggcacccatgccctcttgtcgaagacggtgcgcttcgccgacttggcgttggtc
gtggtcgacgaggagcagcgcttcggcaccgtgcagaagcgggcattggctcggctttcg
gccggcgtccactgtctggcgctcagcgccacgccggttccgcggacgctgcagggggcg
ctggcgggactgcgcggagtcagcgtcatcgatacccctccggtgcggcggcgcccggtg
cgcacgcgggtcgccccctatgacccttcggttctccggtccgccttgatgcgcgaaaag
gcgcggggcggacagagcttttgcgtcgccccgcggatcgccgacctgccggcgctggag
gccgaggtgcgcgcgctcgcccccggtctgtcgatcgccgtcgcgcacggccgtctcccc
gttgccgaactcgatcaggtcatggtcgatgtggcggaagggacagtcgacgtgctggtt
tcaacccccatcatcgagaccggcatcgacattccccgtgccaacaccatcgtgatccgc
cgccccgacctgttcgggcttgggcagctccatcagctccgcggccgggtcgggcgcggg
ggagcacaggcctacgcctatctgctgaccgatccggacactccgctcggcgagcgaacc
gagcgacggctgggctcgcttgaggcgatcgaaagcctgggcggtggcttcgccctcagt
ttgctcgatctcgaccagcgcggggcgggcgacctgctgggaaccgatcagagcggccat
ctgcgcttggtcggaaccgagctgtaccagcatctgctggcccgcgcgctggccggcgcc
gagatggacgatgcccccgaactgcgcctgggcgtgccgcaaaccattcccgccgcgtac
cttccggaggaggacttgcgcatcggcctgcaccgccgcctctcgcgtctgcgcgacgaa
acggcggcagagccgttacgcgaagagatcgaggaccgcttcgggccattgccggaggag
gtcgagctgttgctggcaaccgccgcgctccgcgcgcgctgccgacggctgggcgtcgcc
gccctggtcgccggaccctcgggcgtttcgctgaccctgaacgacacaccctgccgggcc
gtgcgcgaagcggcgctggagcgtctgtggaccggacaggtgcgtcggacagacgaccgc
ctcgtctttgcgctgagcgccgaaggaccgtcggagatcctgaacaacgcgcgcaccgtg
ctcgatcagcttccgcctgtcggcacggcctga
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