Amedibacterium intestinale JCM 30884: Aargi30884_00380
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Entry
Aargi30884_00380 CDS
T06426
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
aarg
Amedibacterium intestinale JCM 30884
Pathway
aarg03420
Nucleotide excision repair
aarg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aarg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Aargi30884_00380
03430 Mismatch repair
Aargi30884_00380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aarg03400
]
Aargi30884_00380
Enzymes [BR:
aarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Aargi30884_00380
DNA repair and recombination proteins [BR:
aarg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Aargi30884_00380
MMR (mismatch excision repair)
Other MMR factors
Aargi30884_00380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
UvrD_C
UvrD_C_2
AAA_30
AAA_11
AAA_22
DEAD
PIF1
Motif
Other DBs
NCBI-ProteinID:
BBK21135
UniProt:
A0A6N4TFA7
LinkDB
All DBs
Position
32990..34735
Genome browser
AA seq
581 aa
AA seq
DB search
MDENYHGANYELAKAEADKVDKQIIEALREGHSFRVEAGAGSGKTYSLNRVIEWIQENMW
SKYSRKKQNVACITYTNAAVEVITERLSKDSFIIPATIHSFAWNAIKQYQSYLVDVVTTD
PDFLPDEGDFFKVNEVTYTLGHRYKENGVQYLYHDDVLKLFCKLLDNAKFRRVFSDKYPL
ILIDEYQDSYKPIIERFVKYFIAEKKSPQFAFFGDAWQTIYQSNKACGIIEHKNLEVIKK
GANFRSSPRIVQLLNDIRPDLPQTSAIDNFQGEVVVITCEDYDGERRTDRNFQGELPPEE
LKIRLNKISEEIKQNTADSDTLKILMITHKVLAAQQGYERLLNIINDGLRDKEDPFLLFF
MDTVEPIYHALETLNMQLLFDTLGIKRYPITKKSEKEKWKIFQEKLREAREKRAIDVIEV
INETKLIPFPPKLDGWYHLYHNASGTIYSSNASIQAFLELDYTQFISAIEFLYPEALFST
EHGVKGEEYDNVIFVISKGWNMYQFETYAPMITGKASIPSGKQISFERNRNLFYVCCSRP
RKRLFFFVTVPIDRTFKEFLMELVGEENYYTYSQYIKKNIE
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaattatcatggtgcaaattatgaattagcaaaagctgaagctgataaagta
gataagcaaattatcgaagcattacgggaggggcatagttttcgcgttgaagcaggtgcg
ggttcgggaaagacttattcgcttaatagagtcattgaatggatacaagaaaatatgtgg
tctaaatatagtcgaaaaaagcaaaatgtagcttgtattacatatacgaacgctgctgta
gaggtaattacagaaagattatcaaaagattcatttattattcctgctacaattcattcg
tttgcttggaatgcaatcaaacaatatcaaagctatcttgtggatgttgtaacaacagac
cctgattttttaccagatgaaggtgacttttttaaggttaatgaagttacatatacttta
ggacatcgatataaggaaaatggagttcagtacctttatcatgatgatgttcttaagctg
ttttgtaaactcttggataatgcaaaatttcgacgtgtattttctgataaatatcctttg
attttgattgatgaatatcaagactcctataaaccaattatcgaacgctttgttaaatat
tttattgcagaaaagaaatcgccacaattcgcttttttcggagatgcgtggcaaactatt
tatcagtcaaataaagcttgtgggattatagaacataaaaatttagaagtgataaaaaaa
ggtgcaaattttagatcttctccaagaattgttcaacttttgaatgatatacgaccagat
ttgccacaaacatctgcgatagataactttcagggggaagtagttgtaatcacatgtgag
gattatgacggagaacgtcgtactgatcgtaattttcaaggtgaattgcctccagaagag
ctaaaaatacgtttaaataaaatctccgaagaaataaaacaaaatacagcggattctgat
acattaaaaattttaatgattacacataaagtattggctgcacaacagggatatgaacga
cttttaaatatcattaacgatggtttacgtgacaaggaagatccttttcttttgtttttt
atggataccgttgaaccaatctaccatgcattagaaacgttaaatatgcagttgcttttt
gatactttaggaattaagagatatccgattactaagaaatcggagaaagagaagtggaaa
atatttcaagagaaattacgagaagcgagagagaaaagagcaattgatgttattgaggtt
ataaatgaaacaaaattaattccttttccacctaagttggatggatggtatcatttgtat
cataatgcatcgggaacaatatattcatcgaatgcgtcaattcaagcatttttggagttg
gattatacgcaattcatttcggcaatagaatttttatatcctgaagcgttattttccaca
gaacatggagtcaaaggagaagaatatgacaatgttatttttgtcattagcaagggctgg
aatatgtaccagtttgaaacatatgcacctatgataactggaaaggcttctattccgagt
ggaaagcagatttcttttgaacgaaatcgtaatttattttatgtttgttgttcaagacca
agaaaacggttgttcttttttgtaacagttcctatagatcgaactttcaaagaatttttg
atggaactcgttggagaagaaaattattatacttatagtcagtatattaaaaagaatatc
gagtaa
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