Amedibacterium intestinale JCM 30884: Aargi30884_14060
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Entry
Aargi30884_14060 CDS
T06426
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aarg
Amedibacterium intestinale JCM 30884
Pathway
aarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aargi30884_14060 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aarg03019
]
Aargi30884_14060 (rnr)
03016 Transfer RNA biogenesis [BR:
aarg03016
]
Aargi30884_14060 (rnr)
Enzymes [BR:
aarg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Aargi30884_14060 (rnr)
Messenger RNA biogenesis [BR:
aarg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Aargi30884_14060 (rnr)
Transfer RNA biogenesis [BR:
aarg03016
]
Prokaryotic type
tRNA degradation factors
Aargi30884_14060 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_RNB
S1_RRP5
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BBK22503
UniProt:
A0A6N4TIA8
LinkDB
All DBs
Position
complement(1404094..1406292)
Genome browser
AA seq
732 aa
AA seq
DB search
MKKKMEILDLLHDSSYKGMTTAELSCYFQMEDSASFTELLKYLNELEGERLIARDSRERY
FLSSHLGYVTGTLRVNPKGFGFVDTTDTSFYIAKEALGLGMDKDIVYAKSWTNNDGSVEG
EVIDVIEHHITHIVGVVKIKEGRRYFLPDSPILNRRFRITNYEDFHLVNDSKVLLKIDSY
GATLKCHIEKEIGYKYDPGIDILSVLLEKDINPEFSDAVMKEVMQIEETVQDEELRNRED
LRSLLTITIDGEDARDLDDAISIERIPEGYRLYVHIADVSYYVREGSEIDKEAYHRGTSV
YVVDRVVPMLPHALCNGICSLNPHVDRLTLTCQMDINRKGDVINYKIFPSVINSNERMTY
TNVNKILEGDEKVQKRYPYLLDMCIQMKVLSDIIRRRREKLGAIDFDTREAKILVDEKGK
PKDIVLRERKDAERMIEDFMIAANETVATHAKWMEIPSMYRVHEQPEPKKIREFARVAKV
LGYTFQGGIQNVYPMQLQSLLKEAKGQDNYFVLSSFMLRSMQKARYDNRCLGHFGLALKE
YLHFTSPIRRYPDLIVHRMLRKYVFNSNTNTEKMNSDEKWCEEAAIQASDRERNAVDAER
EVDDMKKAEYMEKYVGSVFDGVVSGITKFGMFVELENTVEGLVHIASLQDDYYHYDETTH
SLIGEHTAKVYRMGQHVHVKCIGADRFKREVDFEVLVQKSKKKSPPLKQQKRLAKQDRTR
NRKRRKRKGGRL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaaatggaaatattagatttgctgcatgattcttcttataaaggaatgact
acagctgagctgtcttgttactttcaaatggaagacagtgcctcctttacagagttgtta
aaatatttgaatgagctagaaggagaacgtttaattgcaagagattctagggaacgttat
tttttgagttctcatttaggatatgttacaggaacattgcgtgtgaatccaaaaggattt
ggttttgtagatacaacggacacaagtttttatattgcgaaagaggcgttaggccttgga
atggacaaagatatcgtatacgcgaaaagctggacaaataatgatggcagcgtagaagga
gaagttattgatgttattgaacatcatattacacatattgtaggtgtcgtaaaaataaaa
gagggaagaaggtattttttaccggattctcctattttaaatcgaagatttagaattact
aattatgaggattttcatttggtcaatgattcaaaagtgttgttgaagattgatagttat
ggtgctacattaaaatgtcatattgaaaaagagattggatataaatatgatccgggaatt
gatattttaagtgtacttttagaaaaagatattaatccagaattcagtgatgctgtcatg
aaagaagttatgcagattgaagaaacggtacaagatgaagaattaagaaatcgtgaagat
ttacgttcgctattgacaattactattgatggagaagatgcacgtgatttggatgatgcg
atttctattgaaagaataccagaaggatatcgtctgtatgttcatattgcagatgtatcg
tattatgtaagagaaggaagcgaaattgataaggaagcatatcatcgtggaacatctgtt
tatgttgttgatcgtgtagttcctatgctgccacatgcattatgcaatgggatttgttct
ttaaatccccatgttgatcgtttgactttaacttgtcagatggatataaatcgcaaggga
gatgttataaactataaaattttcccgagtgttattaacagtaatgaaagaatgacgtat
acaaatgttaataaaatattagaaggggatgaaaaagtccagaaacgctatccttacctt
ttggatatgtgtattcaaatgaaagtgttatccgatatcattcgaagacgcagagaaaaa
ttaggggcaattgattttgatacaagagaggcaaaaattcttgttgatgagaaaggtaaa
cctaaagatattgttttgcgtgaaagaaaagatgcagagcgtatgatcgaggattttatg
attgccgcaaatgagactgttgctacacatgcgaaatggatggaaattccatcgatgtat
cgtgtgcatgagcagccagaaccaaaaaagatacgcgaatttgccagagtagcaaaagtt
ttaggctatacgttccaggggggtatccaaaatgtatatccaatgcagctgcaaagtctt
ttaaaagaggcgaaagggcaagataattattttgtgctttctagttttatgttaagaagt
atgcagaaagcacgttacgataatcgctgtttaggtcattttggtttagctttgaaagaa
tatttacattttacttctcctattcgaaggtatcccgatttaattgtgcatcgtatgctt
agaaaatatgttttcaattccaatacgaatacagaaaaaatgaatagtgatgaaaaatgg
tgtgaagaagctgctatacaggcaagtgatcgtgaacgtaatgccgtagatgcagaacgt
gaagtagatgatatgaagaaagcagaatatatggaaaaatatgtaggttctgtatttgat
ggcgtagtcagtggaattacaaaatttggaatgtttgttgagctggaaaatacagtagag
ggattggtccatatcgcaagcttgcaagacgattattatcactatgacgaaactacacat
tccttaattggagagcatacagcaaaagtatatcgcatgggacaacatgtgcacgtgaaa
tgtataggcgccgatcgtttcaagcgagaggtggattttgaagtgctggtacagaaatcc
aagaaaaaaagtccgccattaaaacagcaaaagcgcttagctaaacaggatagaactaga
aatcgaaaacgaagaaaacggaaaggcggaagattatga
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