Amedibacterium intestinale JCM 30884: Aargi30884_24890
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Entry
Aargi30884_24890 CDS
T06426
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aarg
Amedibacterium intestinale JCM 30884
Pathway
aarg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aarg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Aargi30884_24890 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aarg03021
]
Aargi30884_24890 (rpoC)
03400 DNA repair and recombination proteins [BR:
aarg03400
]
Aargi30884_24890 (rpoC)
Enzymes [BR:
aarg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Aargi30884_24890 (rpoC)
Transcription machinery [BR:
aarg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Aargi30884_24890 (rpoC)
DNA repair and recombination proteins [BR:
aarg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Aargi30884_24890 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
BRE
PA_decarbox
MCM_C
Motif
Other DBs
NCBI-ProteinID:
BBK23586
UniProt:
A0A6N4TK50
LinkDB
All DBs
Position
2520434..2524306
Genome browser
AA seq
1290 aa
AA seq
DB search
MSVNDFASIQVSLASPERIHEWSHGEVKKPETINYRSQKPERDGLFCERIFGPSKDWECY
CGKYKKVRYKGVVCDRCGVEITKSSVRRERMGHIELAAPVAHIWYLRGIPSRMALLLDVT
PKQLEEVVYFVSWIVTDPKETSLEYKQVLSEREYREYMAMYGPGSFVAQTGAEAALTLLK
NVDLESEYKQIQEALENAQGEKRKKLIKRLDTVNSFRNSDNKPEWMVLTVIPVIPPDLRP
MLQLDGGRFATSDLNDLYRRVITRNNRLKKLLELGTPAIIVQNEKRMLQEAVDALIDNGR
RSKPITGAGGRALKSLSHSLKGKQGRFRQNLLGKRVDFSGRSVIAVGPDLKMYQCGIPRE
MAIQLFKPFVINEIVNQEIASNPKTAEKLIDRQDPRIWDIVEKVIDGYPVLMNRAPTLHR
LGIQAFKPKLVEGRALRLHPLVCTAFNADFDGDQMAVHVPLSEEARAEALVMMLGSNNIL
GPKDGKPIVTPGQDMVMGNFYLTMEETAEEFYEEAERYNSVDCPKSAELWKRYGDNEGHV
FGNINEILMAYQTEQIHLHSRIAIPARALKKTSFTAEQQNKYLLTTVGKVIFNNMFPSDF
PFLNEVSGENFKATPDRYFLEMGKDVKEAIRNLPITPAFKKKDLGKIIGEIFKRYSTEKT
SQILDEIKDMGFKYSTVAGVTVSLSDIEVAPHKEDHVEYGKEKAEELKTLRKKGKLTMQE
WERHLNKLWADVKDDIAKELLGNLPRKNPINMMARSGARGNTSNFTQLAGMRGLMAKPSQ
SKSAKGEYVPSIIEVPIYSCFREGLNVSEFFISTHGVRKGLTDTALKTAESGYLTRRLVD
VAQDVIIKQEDCGTDKGYWVEAIVDRKTNTVIESLFDRLVGRYSKQEVTDPKTGEVIIES
DEFISEAIAQKIVDAGVEGMYIRSAFTCKSIYGVCKKCYGRNMATGKDVEVGEAVGIMAA
QSIGEPGTQLTMRTFHTGGVASADGGDITQGLPRVEELFEARCPKGVAVLAQISGEITSI
EQVETGYEVVVSNDKESIVHKLSLVQAIRPWLKVGATIEAGDKITEGQVDPKELLKVAGV
RQVQNYILKEVKKVYQSQGIEISDKHIEVMIRQMLRKVVVLEGNDTDLNSGVQISLTEIT
KINRQALLSGKTPATFKPVLLGISKASVETDSFLSAASFQETTKVLTDAAIKGKKDYLIG
LKENVIIGKLIPAGTGVKNDRPMNEIVHEKAEELREKRIERNRKPEDEGFMSYAASPETF
TSEMVKQLMAGRDAIHAESSVEDEVNDVNE
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttaatgattttgcttcaattcaggtaagccttgcttcacctgaaagaatccat
gaatggagccatggagaagttaaaaaaccagaaactattaactatcgttctcaaaaacca
gaacgcgatggattattctgtgaacgtatttttggtcctagcaaagactgggaatgttat
tgtggaaaatacaaaaaagtacgttacaaaggagtcgtgtgtgatcgctgtggtgtagaa
attacaaaatcaagtgttcgtcgtgaacgtatggggcacatcgaacttgctgcaccagta
gctcatatctggtatttacgtggtataccaagccgtatggcacttcttttggatgttact
ccaaaacagctggaagaagtggtatacttcgtttcttggattgttactgatccaaaagaa
acaagtttggaatataaacaggtattgtcagaaagagaatatcgtgagtacatggcaatg
tatggtccaggaagctttgttgcacagacaggagcagaagcagctttaacattgttgaaa
aatgtagacttggaatctgaatataaacagattcaggaagctttggaaaatgcacagggt
gaaaaacgtaaaaaattgattaagcgtttggatacagtgaattctttccgtaattctgac
aacaaaccagaatggatggtattaactgtaattccggtaataccacctgatttgcgtcca
atgctgcagctggatggaggacgttttgcgactagtgatttaaatgacttatatcgtcgt
gtaattactcgtaacaatcgtttgaaaaaattgttagaactaggaacacctgcgattatc
gtacagaacgaaaaacgtatgttacaggaagcagtagatgcattgattgataatggacgc
cgttcaaaacctattacaggagctggtggacgtgctttaaaatcattgtctcactctttg
aaagggaaacagggacgtttccgtcagaacttattgggaaaacgtgttgacttctcagga
cgttctgtaatcgcggtaggaccagatttaaaaatgtatcagtgtggtattccacgtgaa
atggcaattcagttgtttaaaccatttgtaattaatgaaattgttaatcaggaaattgca
agtaatccaaaaacagcagaaaaactgattgatcgtcaggatccacgtatttgggatatt
gtagaaaaagttattgatggatatccagtgctgatgaaccgtgcgcctacgcttcaccgt
ttaggtattcaggcgtttaaaccaaaattggtagaaggaagagcacttcgtcttcatcca
cttgtatgtactgcatttaatgcggacttcgatggtgaccagatggcggtacacgtacca
ttaagtgaagaagcaagagcagaagcccttgttatgatgcttggttctaataacattcta
ggtcctaaagatggaaaaccaatcgttactccaggacaggacatggttatgggaaacttc
tatttaacaatggaagagactgctgaagaattctatgaagaagcagaacgctataactct
gttgattgcccaaaatctgcagaattatggaaacgttatggggataatgaaggtcatgtt
tttggtaacattaatgaaattttgatggcgtaccagacagaacagattcatttgcactct
cgtattgcgattcctgcacgtgcattaaagaaaacaagctttacagctgaacagcaaaac
aaatatttgttgacaacggttggtaaagttatctttaataacatgttcccatctgacttc
ccattcttaaatgaagttagtggagaaaactttaaagcaactccagatcgttatttcctt
gaaatggggaaagacgtaaaagaagcaattcgcaatttaccaattactcctgctttcaaa
aagaaagatttaggaaaaatcattggtgaaatctttaaacgttatagtacagaaaaaaca
tctcagatacttgatgaaatcaaagatatgggatttaaatattcaacagtggcaggtgtt
actgtatcattaagtgacattgaagtcgctcctcataaagaagaccatgtagaatatggt
aaagaaaaagccgaggaattaaaaacactgcgtaaaaaaggaaaacttactatgcaggaa
tgggagcgtcacctaaacaagttatgggcagatgttaaagatgatatcgcaaaagagttg
ttaggtaaccttcctcgtaaaaacccaatcaacatgatggctcgctctggtgctcgtggt
aatacgtcaaactttacacagttggcaggtatgcgtggtctgatggcgaaaccgtctcag
tcaaaatccgctaaaggtgaatatgtaccaagtatcatagaggtacctatctattcatgt
ttccgtgaaggtctaaatgtgtctgagttctttatctctacacatggtgtgcgtaaaggt
cttacagatacagcgttgaagacagcggaatctggatatttgacacgtcgtttggttgat
gttgcacaggatgttatcatcaaacaggaagattgtggtacagataagggatactgggta
gaagcaatcgttgatcgcaaaacaaatacggttattgaaagcttgtttgatcgtctagtt
ggacgttatagcaaacaggaagtaacggatccgaaaactggagaagttattattgaaagc
gatgaattcattagtgaagcaatcgcgcagaaaatcgtagatgctggtgttgaaggaatg
tatatccgcagtgctttcacatgtaaatctatctatggtgtatgtaaaaaatgttatgga
cgtaacatggctacaggtaaagatgtagaagttggagaagctgttggtatcatggctgcg
cagtctatcggagaacctggtacacagctgaccatgcgtacattccataccggtggggtt
gcaagtgcggatggtggagatatcacacagggtcttcctcgtgtcgaagaactatttgaa
gcacgttgtccaaaaggtgttgctgtgctagctcagattagtggagaaatcacatcaatt
gagcaggtagaaactggatatgaagttgttgtatctaatgataaggaaagtattgtacac
aagctttctctagtacaggcaattcgtccttggttaaaagtaggggcaacaattgaagct
ggtgataagattacagaaggtcaggtagatccaaaagaacttctaaaagtagctggtgtg
cgtcaggtacagaattatatcttgaaagaagttaagaaggtttaccaaagccagggtatc
gaaatttctgataaacacattgaggtaatgattcgtcagatgcttcgtaaagttgttgtt
ttagaaggaaatgatacagatctaaattctggtgttcaaatttcattgactgaaatcaca
aaaattaaccgccaggctttattgagcggtaaaacaccagcaacatttaaaccggtatta
ttaggtatttcgaaagcatctgtagaaacagattccttcttatctgccgcatctttccag
gaaactacaaaagtattgacagatgctgctattaaaggtaagaaagattacttaattggt
ttaaaagaaaatgtaattattggtaaattaattccagcaggaactggtgttaagaatgat
cgcccaatgaatgaaattgttcatgaaaaagcagaagaacttcgtgaaaaacgtattgaa
agaaacagaaaacctgaagatgaaggatttatgagctacgctgctagtccagagacattt
actagtgaaatggtaaagcagttaatggcaggtagagatgctattcatgcagaatcttct
gtagaagacgaagttaatgatgttaatgaataa
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integrated database retrieval system
