Actinobacillus arthritidis: NYR89_07080
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Entry
NYR89_07080 CDS
T09025
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
aart
Actinobacillus arthritidis
Brite
KEGG Orthology (KO) [BR:
aart00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aart03009
]
NYR89_07080 (srmB)
Enzymes [BR:
aart01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NYR89_07080 (srmB)
Ribosome biogenesis [BR:
aart03009
]
Prokaryotic type
rRNA helicases
NYR89_07080 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WGE88851
LinkDB
All DBs
Position
complement(1527183..1528520)
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AA seq
445 aa
AA seq
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MTTETPFMTFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTA
AFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAY
QNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAA
ETRWRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNLEHKT
KLLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKD
GVVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHD
YKLLGKIKRYTEELLKARVIEGLEPRTKAPKDGELNTTTKKEKARIKKRKEAKKEAAKAK
VKVRHKDTKNIGKRRKPASEAAKSA
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgaaaccccattcatgacctttgaggaattagatttagctcctcaactgtta
aaagcactcaataaaaaaggttacaaacgcccgaccgccgtacaagcggaaaccattcca
cacgcgcttgacggacgtgatttgcttggttcggcaccaaccggcaccggcaaaactgcc
gcatttttattgccggcaattcaacatttattggattacccacgccgtaaaccgggcgca
cctcgtattttaattttaacgccgactcgtgaacttgcgatgcaagtagcggaagaagcg
caagcttttgccgaatttaccaagcttagtattgcgacgattaccggcggtgtggcgtat
caaaaccacggcgaagtgtttaacagcaaccaagatattgtggtcgcgacaccgggacgt
ttaatgcaatatatcaaagaagaaaattttgactgccgtgcggtagagattttgatcttt
gatgaagcagaccgtatgttacaaatgggctttggtcaagatgcggaaaaaattgcggcg
gaaacccgttggcgtaaacacacgtggttattctcggcaacgctagaaggcgaattgttg
gtggattttactgaccgtattttggataacccgttaaaaattgatgcggaaccaagtcgc
cgtgagcgtaaaaaaatccaacaatggtattaccatgcggataacttagaacacaaaacc
aaattgcttgctcgtttaatttctacgatggaaatggaaaaagcgattgtattcgttcgc
cgtcgtgaagatgtgcgtgagttaagcgatacgttacgtaaacgtggcttacgttcgact
tatttagaaggcgatatggcacaaactcagcgtaaccaagcgatcgcccgtttgaaagac
ggtgtagtgaatgtattggtagcgacggatgttgccgctcgtggtattgatattgatgat
gtcgattatgtgattaacttcgacttaccgtatagtgcagatacctatttgcaccgtatc
ggtcgtaccgctcgtgccggtaaaaaaggatcggcgatttcgttggttgaagcgcatgat
tacaaactgttaggcaaaatcaaacgctataccgaagagttgttaaaagcgagggtgatt
gaaggtttagaacctcgtaccaaagcgccgaaagacggtgagttgaatactacgaccaaa
aaagaaaaagcacgtattaaaaaacgtaaagaagcgaagaaagaagcggcaaaagccaaa
gtaaaagtgcgtcataaagacaccaaaaatattggtaaacgtcgtaaaccggcttcagaa
gcggcaaaatctgcgtaa
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