Actinobacillus arthritidis: NYR89_10315
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Entry
NYR89_10315 CDS
T09025
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aart
Actinobacillus arthritidis
Pathway
aart02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aart00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NYR89_10315 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aart03021
]
NYR89_10315 (rpoD)
Transcription machinery [BR:
aart03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NYR89_10315 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
WGE90254
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All DBs
Position
2144926..2146785
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AA seq
619 aa
AA seq
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MMEQQLEQQSQLELLIAQGREQGYLTISEVHDHLPEELVDAEQIEDIIQMINDMGIKVLE
TAPDTDDLMLAENIADEDVVEEATKVLSTVESELGRTTDPVRMYMREMGTVELLTREGEI
DIAKRIEEGINEVQCAVAEYPEALTDLIGFYAQVEEGTMRLSDLVTAFVDPNIEADETLA
DLDVDLDDEEAEDVADVDDENEEEEGDSSADTGDDNSIDPELAREKFYALREQHEKALQA
IQKHGRAHKKSREHIQALSDIFREFRLVPKQFDLLVESMQKMMKQVRAEERQIQRYAVEY
AQMKKADFLKLFQGNETSEEWIEKAINAKKGVAPKLANYIDQIRVNIANLQRMEQNTGLT
IAQIREIGGRIANGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQCLQEM
GREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDS
ATAESLRIATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSETLRSFLDD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
attatggaacaacaattagaacagcaatcccaattagaacttctgattgcccaagggcgt
gaacaggggtatttaacgatttcggaagtacatgaccacttaccggaagagttggttgat
gcagagcagattgaagatattattcaaatgatcaacgatatggggatcaaggttttagaa
actgccccagataccgatgatctgatgcttgcagaaaatatcgcagatgaagacgtggtt
gaagaagcaacaaaagtgctttcgactgttgaatcggaattaggacgaacaactgatccg
gtacgtatgtatatgcgtgaaatgggaacagtcgaattacttacccgtgaaggcgagatt
gatattgcaaaacgtattgaagagggtattaacgaagtacagtgtgccgttgcagaatat
ccagaagccttgaccgatttaatcggtttctacgctcaagtggaagaaggtacaatgcgt
ttatcagatcttgtaacagctttcgtggatccaaacattgaagcagatgaaacattagcg
gacttagatgtcgatttagatgatgaagaagctgaagatgttgctgatgttgatgatgag
aacgaagaggaagaaggcgatagcagtgcggatacaggcgatgataactctattgaccct
gagcttgcacgtgaaaaattctatgcattacgtgagcaacacgaaaaagcgttacaagcg
attcaaaaacacggtcgtgctcataaaaaatcaagagaacatatccaagcactttcagat
attttccgtgagttccgtttagtaccgaaacagtttgatttacttgttgaatctatgcaa
aaaatgatgaaacaagtgcgtgcggaagaacgccaaattcaacgttatgcggttgaatat
gcacaaatgaagaaagcagatttcttaaaattgttccaaggtaatgaaacctcagaagaa
tggattgaaaaagcaattaatgcgaaaaaaggtgtcgcaccaaaactagcgaattatatt
gaccaaattcgagtcaatatcgctaatttacaacgtatggagcaaaataccggtttaacg
atcgcacaaattcgtgaaatcggcggccgtattgcaaatggtgaattaaaagctcgccgt
gcgaaaaaagaaatggtagaagcgaacttacgtttagttatctcgattgcgaagaaatat
accaaccgtggtttgcaattcttagatttgattcaggaaggtaatatcggtttgatgaaa
gcggtagataagtttgaatatcgccgtggttataaattctctacttatgcgacatggtgg
attcgtcaggcgattactcgttcaattgctgaccaagctcgtacgattcgtattcctgta
catatgatcgaaacgattaataaactgaatcgtatttctcgtcaatgtttacaagaaatg
ggacgtgaggcgacgccagaagagttagcagagcgtatgggcatgccggaagataagatt
cgtaaagtgttgaagattgcgaaagagcctatctcaatggaaactccgattggtgatgac
gatgattcacatttaggtgattttattcaagacgaaagccttgaattaccgttagattca
gcaacggcggaaagtttacgtatcgcaactaacgaagtgttagaaggtttaacacctcgt
gaagcgaaagttttacgtatgcgtttcgggattgatatgaatactgaccatacccttgag
gaagtcggtaaacaatttgatgtaacacgtgagcgtattcgtcagattgaagcgaaagcg
ttacgcaaacttcgtcacccgagccgttcggaaacgttacgtagtttcttagatgactag
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