Candidatus Amoebophilus asiaticus: Aasi_0013
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Entry
Aasi_0013 CDS
T00730
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aas
Candidatus Amoebophilus asiaticus
Pathway
aas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aasi_0013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aas03019
]
Aasi_0013
03016 Transfer RNA biogenesis [BR:
aas03016
]
Aasi_0013
Enzymes [BR:
aas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Aasi_0013
Messenger RNA biogenesis [BR:
aas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Aasi_0013
Transfer RNA biogenesis [BR:
aas03016
]
Prokaryotic type
tRNA degradation factors
Aasi_0013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
PCB_OB
KH_DEAH11_2nd
DUF4807
Motif
Other DBs
NCBI-ProteinID:
ACE05470
UniProt:
B3EU51
LinkDB
All DBs
Position
16013..18154
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AA seq
713 aa
AA seq
DB search
MLNKIISKTISLPEHREITIETGKLAKQADGSVVVRMGDTMLLATVVFKQELDPTVDFLP
LHVEYQEKFAAAGKIPGGFLRREGKLGDHEVLISRLVDRAIRPLFPDNYKHETQINIFLI
SADPEILPESLAGLAASAALMISPIPFEGPISEVRVARIDGQFVVNPTQSALEKADIDLM
VGGSEKNILMVEGEMDEVQEADIIAAIQFAHEAIKLQCQVQKELADAVATLKFEAEPLQE
TENFELKDRTFKALYDKVYATAKKGITNKHLRKSSFKQIKKEYLKELLQQDPETSTVHFD
KYYYELEKQVVRDLALNEGLRLDGRKLDEIRAIESEIDYLPAAHGSSLFTRGETQSLTTV
TLGTKLDEQLIDRALLNGYSRFMLHYNFPSFSTGEVKFNRGPGRREIGHGHLAMRALKKV
LPLDTENPYTIRIVSDILESNGSSSMATVCAGSLALMDAGISIRSAVSGIAMGLLMDEQT
GKHAILSDILGDEDALGDMDFKVAGTAKGITACQMDIKVSGLTPQLLQKALEQAKAGRLH
ILGEMNKTITEPKTTYKKHAPSFSTMTIPKNMIGAVIGPSGKIVQEMQRETGTTIIIEEV
EGKGIIKFFGPNQEAVQSAEKRVKDIVAEPVVGDVYQGTVKSIVPFGAFVEFMPGKEGLL
HISEVKWERIENLDQVLELGEVIPVKLLEIDPKSGKYKLSRKVLLPNPKATEA
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgcttaacaagatcatatctaaaacaataagcttacctgaacacagagaaataaccata
gaaacaggaaaacttgcaaaacaagctgacggttctgtagtggtaagaatgggcgatacc
atgctactagcaacagtggtatttaaacaagaactagaccctactgtagatttcttacca
ctacatgtagaatatcaagagaagttcgcagcagctggtaaaattcctggcggcttttta
cgtcgtgaagggaaattaggggaccatgaagttttaatttctaggttagtagatagagct
ataaggcctttgttccctgataattataaacatgaaacacaaatcaacatttttttaatt
tctgcagacccagaaatattaccagagtcgctggcaggactagctgcttctgctgctctt
atgatctctcctataccttttgaaggacccatatctgaagtacgagtggcaaggatagac
ggacaatttgtcgttaatcctactcagtctgcattagaaaaagccgatattgacctaatg
gttggaggtagtgaaaagaacatcttgatggtagaaggtgaaatggatgaagtacaagaa
gctgacattatagcagctatacaatttgctcatgaagccattaagctacaatgtcaagta
caaaaagaattagcagatgcagtagcaactcttaagttcgaggcagagccattacaagaa
acagaaaactttgaattaaaagacagaaccttcaaggcattatatgataaagtatatgct
acagcaaaaaaaggtattactaataaacaccttcgtaaaagttcttttaaacaaatcaaa
aaagaatatctaaaagaattattacagcaagatccagaaaccagcacagtccattttgac
aaatactactacgaattagagaaacaggtagtgcgtgacttagctttaaatgaagggcta
cgcctagatggaagaaaattagacgaaatacgagctatagaatctgaaatcgattatcta
cctgctgcacatggttcttccttatttactagaggtgaaacacaatcgctaactaccgtt
actttaggcacaaagctagacgagcagctgatagaccgtgcattattaaatggctatagc
cggtttatgttacattataatttccctagcttttctacaggcgaagtgaaatttaacaga
ggtcctggcagaagagaaataggccatggacatttggctatgcgtgcacttaaaaaagtg
ttacctctagatacagaaaacccttataccattcgtattgtttcagatatattagaatct
aatggatcttcttctatggctactgtatgtgcaggatcattagcgttaatggatgcaggt
atatctattcgatctgctgtttcaggcatagccatgggcttgctaatggatgagcaaact
ggcaaacatgctatcttatctgatatattgggtgatgaagatgcattaggagatatggat
tttaaagtagctggcacagcaaaagggatcactgcatgccagatggatataaaagtctct
ggtcttactccacaacttttacaaaaagcacttgagcaggctaaagcaggcagattacat
attttaggagaaatgaataaaaccattacagagcctaaaactacttataaaaagcatgct
cctagctttagtaccatgaccatacctaaaaatatgataggtgcagttattgggccaagt
ggtaaaattgttcaagagatgcaacgtgaaacaggtactaccattattatagaagaagta
gaaggaaaaggaattattaaattctttggtcctaaccaagaagctgtgcaatcagcagag
aaaagagttaaagatattgttgcagaaccagtggtaggagacgtgtatcaaggaaccgtg
aaatctattgttccttttggagcttttgtagagtttatgcctggcaaagaaggtttattg
catatctctgaagtaaaatgggaacgaatagaaaatcttgatcaagtactagagctaggt
gaagtaatacctgttaaactactagagatcgaccctaaatcaggcaaatataaactgtct
agaaaagtattacttcctaacccaaaagcaacggaagcttaa
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