Candidatus Amoebophilus asiaticus: Aasi_0272
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Entry
Aasi_0272 CDS
T00730
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aas
Candidatus Amoebophilus asiaticus
Pathway
aas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Aasi_0272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aas03400
]
Aasi_0272
Enzymes [BR:
aas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Aasi_0272
DNA repair and recombination proteins [BR:
aas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Aasi_0272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
LIP
Tiam_CC_Ex
TSNAXIP1_N
Motif
Other DBs
NCBI-ProteinID:
ACE05711
UniProt:
B3ER59
LinkDB
All DBs
Position
complement(309971..313342)
Genome browser
AA seq
1123 aa
AA seq
DB search
MQAKDLISLYTRNNWIKELLNNICNSSHSFIRLKGLAGSLPAILGAALHQLNNFTQIFIL
QDKEAAAYLYTDLLNLLGPQKVVLYPAIEYQTDSKAFLDTAANLMRNEILQQLRQSNKVS
KIIVTYPEAIVTKVISQDSLTKNSWSIQPKEKLVLSEFVDTLIDKGFEKVDFVYEAGQFA
IRGGIIDIFSYGSQLPYRVELLGNEIESIRLFNPSNQLSTEKVKEAILLSYTEPFNTTIT
YQSFFDYLPEESVVWLKDYEMVINALKNKREELNGRPQQISNSATSSTTEKVELDKILYE
HIEDWEKNIRRFTCVEFGNRFYLESEEVIEYKASSQPSFNQQLSLLAENLQQNQKLGLEN
LILVESTSQFERLANMLEELDIKVQFKALPIGISQGYIDYQIGIACYTEHQIFGRYYRYK
SPQKYSKSQAFTLKELNNLQPGDYVVHIDHGIARFSGLSRVSVNDKVQEVLRLVYKDNDV
VYLSLHALHKISKYTGKEGIVPTMSKLGSGAWEQKKSKVKHKVQVIAKELIQLYSKRKYA
PGFAFSKDTFLQAEMESSFIYEDTPDQASATADVKKDMEAPHPMDRLVCGDVGFGKTEVA
IRAAFKAVYDRKQVAVLVPTTILALQHYESFKNRLSNFPVDVKYVNRFKSKQEIKRIQEA
AAQGKIDILIGTHTILGKAFEFKDLGLLVVDEEQKFGVKAKDRIKEFKVNVDVLTLTATP
IPRTLHFSLMGARDLSIIATPPSNRQPVQTSIHTFDKKIVQDAIHYEVQRGGQVFFVHNR
INNIQEVANMLYKLVPEYRIGIAHGQMDGDQLEKKMLTFIAGGYDILVSTNIIESGLDIP
NANTIIINDSHMFGLSDLHQMRGRVGRSNKKAFCYLIAPPNSSLTEEARKRLSTLEEFTE
LGDGFKVAMRDLDIRGAGNLLGAEQSGFIADVGFEAYCKILDEAVQELKESEFKELFAEE
LARKGQLSNIDCTLETDLELLIPTSYVNNDTERLRLYTKLDNIENEKGLENFQVEIQDRF
GALPTSVQELIKAVKLRWVAKKLCLQKIRLKDNIMRCYFIPSPPKTVFSETLNCILNYIQ
EHPQRCQLKELKNQLSLTIHAINTVEEAYEILKCLWNNKEFCD
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaaaagatttaatttccctgtatacaagaaataattggataaaagaattacta
aataacatatgtaattcctcacattcatttattcgtttaaaaggcctagctggtagctta
ccggctatattaggtgctgctttacatcaattaaataattttacacagatatttatttta
caggataaagaggcagctgcttatttatatacagacttgcttaatttacttggccctcag
aaggtagtactatatccagctatagaatatcagacagacagcaaagcttttttagatact
gcagctaacttaatgcgtaatgaaattttacagcagcttagacaaagcaataaagtctct
aaaattattgtgacatacccagaagccattgttacaaaagtgataagccaagatagttta
actaaaaatagctggagtatacaaccaaaggaaaaactagttttatcagagtttgttgat
acacttattgacaaagggtttgaaaaagtagattttgtatatgaagcaggccagtttgca
attaggggtggcattatagatattttttcttatggcagccagcttccatatcgagtagag
ctgctaggaaatgagatagaaagtatacgtcttttcaatccttctaatcaactttcaaca
gagaaggtaaaagaagctatcttactttcttatactgaaccatttaatacaaccataacc
tatcaatctttctttgattatttacctgaagaatcagttgtgtggttaaaggattatgaa
atggtgattaatgcactgaaaaataaaagagaggaattaaatggccgccctcaacagata
agtaactcagccacttctagtactacagagaaggtagaattagacaaaatattatacgag
catatcgaagactgggagaaaaatataagaagatttacttgtgtagaatttgggaataga
ttttacctggaaagtgaagaagtaattgagtacaaagcttcatcacagcctagttttaac
caacaacttagtttattagctgaaaatctacagcaaaatcaaaagctaggattagaaaac
cttatattggttgaatctacaagccagtttgagcgtttggctaatatgcttgaagagctg
gatataaaagtacaattcaaggcattgccaatagggatcagccaaggttatatagattat
cagataggtatagcgtgctatacagaacatcaaatatttggccgctattaccgttataaa
tcacctcaaaaatattctaagagccaagcatttacactgaaagagcttaataatctacaa
ccaggtgattatgtagtacatatcgatcatggtattgctcgtttttctgggcttagtagg
gtttctgtaaatgataaagtgcaagaagtactaaggcttgtatataaggataatgatgtc
gtttaccttagcctacatgctttgcataaaatttctaaatatacaggtaaagaaggcatt
gttcctacaatgagcaagcttggtagtggtgcttgggagcagaaaaagtcaaaggtaaag
cataaggtgcaagttattgccaaagaacttattcagctatacagtaagcgaaaatatgct
cctggatttgcatttagtaaagatacattcttacaagctgaaatggaatcatcttttata
tatgaagatactcctgaccaagcatctgctactgcagatgttaaaaaagatatggaggca
ccacatcctatggatagattggtatgtggtgatgtagggtttggaaagacagaagtagct
attcgagcggcttttaaggctgtatacgaccgtaaacaagttgctgtattggtccctacc
actattttagccttacaacactatgaatcttttaagaacagattatctaattttcctgtt
gatgttaagtatgtcaatcgatttaaatccaagcaggagattaaaagaatccaagaagct
gcagcacaaggtaaaatagatatactaattggtacccatacaattttaggtaaagcattt
gagtttaaagatttgggcttattagttgttgacgaagagcaaaagtttggagtaaaggct
aaagatcgtattaaagagtttaaggtaaatgtagatgtgctaacccttactgcaacacct
attcctagaacattgcatttttcattgatgggtgccagggatttaagtattattgctacc
cctccttctaacagacaacctgtgcaaacttccatacacacttttgacaaaaagattgta
caagatgcaatccactacgaggtacaacgaggtggacaagtattttttgtacataatcga
ataaataatattcaagaagtagcaaatatgctttataagctagttcctgaatacagaatt
ggtattgcacatggccagatggatggagaccagctagagaaaaagatgcttacttttata
gctggaggatatgatattttggtttcaaccaacatcatagaatcaggcctagatattccc
aatgccaataccattattatcaacgatagtcatatgtttgggctttcagatttgcaccaa
atgcgtgggagggttggcaggtctaacaagaaggctttttgttatttaatagctccacct
aactctagccttactgaagaagcccgcaagcgattaagtactttagaggaatttacagaa
ttaggagatggatttaaagtggctatgagagatttggatattcgaggtgccggtaatttg
ttaggcgctgaacagagtggatttatagccgatgtaggatttgaagcctattgtaaaatt
ctagatgaagcagtgcaagaacttaaagaaagtgaattcaaagagttattcgcagaagag
ctagctcgtaaaggtcagttgtctaatatagattgtacgcttgaaacagatttggaatta
ttaattcctactagctatgtaaacaatgataccgaacgtctaaggctttatactaaacta
gataacatagaaaacgaaaaaggtttggaaaacttccaggttgaaatacaagatagattt
ggtgctctaccaacgtcagtccaagaacttattaaagctgtaaaacttagatgggtagct
aaaaagctatgtttacagaagataaggctaaaagataatattatgcggtgttattttatt
ccttcgccaccaaaaactgttttctctgaaaccttgaactgtatacttaattatatacag
gaacatcctcaacgttgtcagctgaaagaacttaaaaatcaactaagcttaactatacat
gccattaatactgtagaggaagcatatgaaattttgaaatgtctatggaataataaagag
ttttgtgattaa
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