Acetobacter ascendens: A4S02_01805
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Entry
A4S02_01805 CDS
T05523
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aasc
Acetobacter ascendens
Pathway
aasc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aasc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4S02_01805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aasc03019
]
A4S02_01805
03016 Transfer RNA biogenesis [BR:
aasc03016
]
A4S02_01805
Enzymes [BR:
aasc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A4S02_01805
Messenger RNA biogenesis [BR:
aasc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A4S02_01805
Transfer RNA biogenesis [BR:
aasc03016
]
Prokaryotic type
tRNA degradation factors
A4S02_01805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AOW45693
UniProt:
A0A1D8QTL8
LinkDB
All DBs
Position
complement(354589..356619)
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AA seq
676 aa
AA seq
DB search
MSASPYVSALPSEQELRAFLESRTGTATGLTDILRNFRLPMRQKAAIRALLHDMAVAENL
LDLAPGTLKASIGLPDIARMRVSYIRDDGSAAGFLADDALSRPVVLLIKPPDTPYLFPGD
IVLVRLRPATGTQKREVRGLRLLTRLDNNLPVTPASTPEPLLLPCDARLNLPLTPEEDAS
SLPLTPQQIGLATPHTLPNGAYAGHVHSILGKANDAGMPSRLSLLIHHPPTAFSEQAEAE
AQQIAQQSAALQGAPAPSGRTDLRHLPLITIDDASAHDFDDALWAEQTAEGFHLIVAIAD
VAHWVKPGSALDKEAQERGNSIYLPDKVVPMLPLALSAQACSLLPGQDRFCVFADMHITP
AGHVVSAQIGQGIMQSAARLTYEAVQQVFDTPAHQPTLPPEHPAAQLPSALLPALRNVGA
AIRQAATQRGVMEREETGWNVQFDTTGQPCAFVSRNTQEAHYMVAACMILANQIAAEKLQ
AQALPALFRTHAQPSPDSPRHMARYSTRAASHYDLRLGHYTHFTSPIRRYADLLAHRALT
HINDSSAQADTRLPAPDVALASQLNFTERRAATIMQDSLNRLAAIFLAPFVGQKMFAHVM
TATRHGLRVRLTKTGTPSFLAWSAFPDRTGMNDDSQHTHASAHHPHVQSGAVLSVTLAGT
CPARGTLMLTDAVYEH
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcaagcccgtatgtttctgccctgccatctgagcaggagctacgggcttttctt
gaaagccgcaccggaactgccaccgggttaacagacattctgcgcaacttccggcttccc
atgcggcaaaaggccgccatacgtgccctgctgcacgatatggctgttgcggaaaacctg
cttgatcttgctcccggcacactcaaggcatccatcggcctgcctgatatcgcccgtatg
cgggtgtcctatattcgagatgatggcagcgcggctggctttttggccgatgatgctctg
tcccgccccgttgtattgctgataaagccgccggatacaccgtatctctttcccggcgat
atcgtgcttgtgcgcctgcgaccggcaacaggcacccaaaagcgcgaggtccgtggcctg
cggctgcttacccggcttgataacaacctacccgttacccctgccagtacaccggaaccc
ttgctgttaccatgtgatgcccggttaaacctgccgcttacaccagaagaagacgcaagc
tctctcccgctcacaccacagcagattgggctggcaacacctcatactctgcccaatggc
gcttatgcggggcatgtgcatagcattttaggcaaggcgaatgatgcaggcatgccctcg
cgcctcagcctgttgatccatcatccacccacggcattttcagagcaggccgaggccgaa
gcccagcagatcgcacagcaaagtgctgccttacagggcgcaccagcaccttctggccgc
acagatttacgccacctgccactcatcaccattgatgatgcctcggcgcatgattttgat
gatgcactctgggctgaacaaacggccgagggttttcatcttatcgtggccattgccgat
gtagcgcattgggtaaagcccggctccgcgctggataaagaagcccaagaacggggcaat
tccatttatctgccagacaaagtggtacccatgctgccgctggctctttctgcgcaagct
tgttctctgcttccggggcaggatcgattttgtgtgtttgcagatatgcacatcacccct
gcagggcatgtggtttctgcccaaattggccaagggattatgcaaagtgcagcgcggttg
acatacgaagccgtgcagcaagtatttgatacacccgcacatcagcccaccttgccgccc
gaacatcctgcggcccagctaccatctgccctacttcccgcactgcgtaatgtaggggcc
gctattcggcaggcagccacgcagcgcggtgtgatggaacgggaagaaacgggttggaac
gtacagtttgataccaccgggcaaccctgtgcctttgtgtcgcgtaacactcaggaagca
cattatatggtggcggcgtgcatgattctggctaatcagatcgcggcggaaaaattgcaa
gcgcaggcattgccagcactattccgcacccatgcgcagcccagcccagatagcccacgc
cacatggcgcgctatagcacccgcgcagcatcacattatgacctacggctgggccactac
acacattttaccagccctatccgccggtatgcagatctgctggcacaccgcgccttaacc
cacataaacgactcctctgcgcaggctgatactcgcttgcctgcgccagatgtggcttta
gcatcacagctaaactttacagaacgccgggcagctaccatcatgcaggatagtctgaac
cggctggctgctatctttcttgccccgtttgttggccagaaaatgtttgcccatgtcatg
acagcaacacggcatggcttgcgagtgagattgacgaaaaccggaactccgtctttcctt
gcatggtcagcttttccggatcgcacagggatgaatgacgactcgcagcacacccatgcc
tcggcacatcacccccacgtgcaaagtggggctgtgctttcagttaccttggcgggcacc
tgcccggcgcgaggtacgctgatgctgactgatgccgtatatgagcactga
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