Acinetobacter sp. AS23: K6I41_17540
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Entry
K6I41_17540 CDS
T11553
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aasz Acinetobacter sp. AS23
Pathway
aasz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aasz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K6I41_17540 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aasz03021
]
K6I41_17540 (rpoB)
03400 DNA repair and recombination proteins [BR:
aasz03400
]
K6I41_17540 (rpoB)
Enzymes [BR:
aasz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K6I41_17540 (rpoB)
Transcription machinery [BR:
aasz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K6I41_17540 (rpoB)
DNA repair and recombination proteins [BR:
aasz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K6I41_17540 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
URM40723
LinkDB
All DBs
Position
complement(3730218..3734306)
Genome browser
AA seq
1362 aa
AA seq
DB search
MAYSYTEKKRIRKNFGKLPQVMEAPYLLSIQVDSYRTFLQGGKSPKNREDIGLQAAFRSV
FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR
EQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP
YRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDMGSYQ
IDLVPDRLRGEMAQFDIADNDGKIIVEQGKRINARHVRQMEASGLAKLSVPDEYLYERIT
AEDITLRNGDVIAANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADSLRADTTSGR
EEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ
KSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV
ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS
ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY
RKVVDGRVTDAVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFVRIPPEKVT
HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEANVARD
SGVCVIANRGGAIEYVDASRIVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNTCINQNIIV
NLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI
HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG
ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA
QLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGGGSTKRGDKLVEEMLSGLELVDLLE
IQPTDEAIAERLSQIQVFLKEKSAEIDEKFAEKKRKLSTGDELTTGVLKVVKVYLAVKRR
IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVGQILETHLGM
AAKGLGDKIEKMLKEQRTVLELREFLDKIYNKVGGEQEDLDSLTDAEVLALSGNLRAGVP
LATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGYMYMLKLNHLVDD
KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR
TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcatataccgaaaagaaacggatccgtaagaattttggtaaattgccccaa
gtaatggaagcaccgtacttactttcgattcaggtcgattcgtatagaacgttcttgcaa
ggtggcaaatctccaaaaaaccgcgaagatatcggtctccaagccgcatttcgttcagtt
tttcctatagaaagttattctggcaatgctgctttagaatttgttgagtatagccttggt
aagcctgagtttgatgtgcgtgaatgtattttacgtggttcgacttatgcggcaccaatg
cgcgtaaaaattcgtttgattattaaagatcgcgaaactaaatctattaaagacgtacgt
gaacaagaagtctacatgggtgaaatgccacttatgacagacaatggtacctttgttatc
aatggtactgagcgtgtaattgtatctcaattacatcgttcacctggtgtgttcttcgat
cacgataaaggcaaaacacattcaagtggtaaagtactttattctgcacgtattattcct
taccgtggttcatggttagatttcgaatttgatgctaaagatttagtttatgtacgtatt
gaccgtcgtcgtaaattattagcaactgttgtgttgcgtgcattgggttataacaatgaa
caaatcttgaatttgttctatgagaaagtgcctgtatatcttgatatgggtagctatcaa
attgacctcgttccggatcgtctgcgtggcgaaatggcgcaatttgatattgctgacaat
gacggtaaaatcattgttgaacaaggtaaacgtattaatgcacgtcacgtacgtcaaatg
gaagcttctggtttagctaagctatcagttcctgatgagtacttgtatgagcgtatcact
gctgaagatattactttacgtaatggtgatgtgattgctgcaaatacattgttaagccat
gaagttatggtgaaactggcagaaggcggcgttaaacaattcaatatcttgtttacgaac
gatattgaccgtggttcatttgttgctgactcattacgtgctgacacaacatctggtcgt
gaagaagcattagttgaaatctataaagtaatgcgtccaggcgagccaccaacaaaagaa
gctgctgaaaacttatttaataacttattcttctcttctgaacgttatgacttatctcca
gtaggtcgtatgaagttcaaccgtcgtttgggtcgcccatacgaagttggtactgaccag
aagtcacgtgaagtagaaggtattttatcgcacgaagatatcatcgatgtattacgtaca
ttagttgaaatccgtaacggtaaaggtgaagtcgacgatatcgatcatttgggtaaccgt
cgtgtacgttctgttggtgaaatgactgaaaaccaattccgtgttggtttagttcgtgtt
gaacgtgctgttaaagagcgtttaagccaagcagaaacagataatttgtctccgcaagat
ctcattaacgcgaaaccagttgcagctgcaatcaaagaattctttggttcaagccaattg
tctcagtttatggatcaaaacaacccattatctgaaattacacataaacgtcgtgtttca
gcgcttggacctggtggtttaacgcgtgaacgtgcgggctttgaagtacgtgacgtacat
caaactcactatggtcgtgtatgtccaattgaaacgcctgaaggtccaaacattggtttg
atcaactcgctttctgtttatgcaaaagcaaatgattttggtttcttggaaacaccttac
cgtaaagtggtagatggccgagtaactgatgctgttgaatacctttctgctattgaagaa
gtaggtactgttattgcacaggccgattctgctgtagataaagatggtaacttaacagaa
gagtttgtttctgttcgtcatcaaggtgaattcgtacgtattccacctgaaaaagtgacg
catatggatgtatctgcacagcaggttgtatctgtagctgcatcacttattccattcctt
gaacacgatgacgcgaaccgtgcattaatgggttcaaacatgcaacgtcaggccgttcct
actctacgtgcggataaaccgcttgtaggtacaggtatggaagcgaacgtagcacgtgac
tctggtgtatgtgtgatcgcaaaccgtggtggtgcgattgaatatgtagatgcttctcgt
atcgttattcgtgtaaacgaagatgaaatgattgcaggtgaggctggtgtagatatttac
aacctcattaaatatacacgttctaaccaaaacacttgtattaaccaaaatattatcgtg
aatttgggcgacaaagttgctcgcggtgacattttggcagacggtccgtcaacagatatg
ggtgagcttgcgcttggtcaaaacatgcgtgtagcgttcatgacgtggaacggttacaac
tacgaagactcgatcttgttatctgagcgcgtacttcaagaagaccgtttaacttctatt
catattcaagaattatcatgtgtagcgcgtgatactaagttaggtgcagaagaaattact
gccgatattcctaacgtaggtgaagctgcactttctaaacttgatgaatcaggtatcgtt
tatatcggtgctgaagttactgctggtgacatccttgttggtaaagtaacgcctaaaggt
gaaactcagttaactcctgaagaaaaattgcttcgtgcaatcttcggtgagaaagcagct
gacgttaaagactcatctttacgtgttccatctggtactaaaggtacagttatcgatgtt
caagtcttcactcgtgatggcttagagaaagatgaccgtgcgttagcaattgaaaaagca
cagcttgactcttaccgtaaagacttgaaagaagaatacaagatctttgaagaagcagct
cgtgagcgtgtaattcgtttgcttaaaggccaagaatctaacggtggtggttcgactaaa
cgtggcgacaaacttgttgaagagatgttgtctggtctagagcttgttgacttacttgaa
atccaacctacagacgaagcaattgctgaacgtttatctcaaattcaagtgttcttgaaa
gagaagagcgcagaaattgatgagaagtttgcagagaagaaacgtaagctttcgactggt
gatgaattaacaacaggcgttctgaaagttgttaaagtttacctagcagttaaacgtcgc
attcagcctggtgataaaatggctggtcgtcacggtaacaaaggtgttgtatctaacatt
ttacctgttgaagacatgccacacgatgcgaacggtgtaccagtagatatcgtattgaac
ccattgggtgtaccatctcgtatgaacgtgggtcagattcttgagactcacttgggtatg
gcggctaaagggcttggcgataaaatcgaaaaaatgttgaaagaacagcgtacagtttta
gaacttcgcgaattcttagacaagatttataacaaagttggtggcgagcaagaagatctt
gatagcttaactgatgctgaagttttagctctttctggcaacttacgtgctggtgtgcct
ttagctactcctgtatttgatggtgctgaagaaagccaaattaaagacttacttgaatta
gctgacatttcacgtactggtcaaacagtattgtttgatggtcgtacgggtgaacagttt
gatcgtcctgtaactgtaggttacatgtacatgctcaaattgaaccacttggttgatgat
aaaatgcatgcgcgttcaactggttcttactcacttgttacacaacaaccgcttggtggt
aaagcacagttcggtggtcagcgtttcggtgagatggaggtctgggcactcgaagcttac
ggcgcagcatatactcttcaagagatgttaactgttaagtcggatgacgttgaaggtcgt
acacgcatctataagaatattgtagatggtaaccattatatggatccgggtatgcctgaa
tcgttcaacgtattgaccaaagagatccgttctttaggtatcaacattgaactgaaaaat
ggtgactaa
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