Aggregatibacter actinomycetemcomitans D11S-1: D11S_0770
Help
Entry
D11S_0770 CDS
T00993
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aat
Aggregatibacter actinomycetemcomitans D11S-1
Pathway
aat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D11S_0770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aat03400
]
D11S_0770
Enzymes [BR:
aat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D11S_0770
DNA repair and recombination proteins [BR:
aat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D11S_0770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
SWI2_SNF2
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACX82167
LinkDB
All DBs
Position
691594..695052
Genome browser
AA seq
1152 aa
AA seq
DB search
MQTQFFHLEIPTQANDHKILANILPGADSLAISEIAAQFDGLTVVVTNDTRSAVRLEKEL
KQPAPSALSQNVTFFPDWETLPYDSFSPHQDIISARLSALFHLQQRKQGIFILPVATLMQ
RVCPPSYLQHNVLLINKGDRFVIESLRLQLEKAGYRAVEQVLEHGEYAVRGALLDLFPMG
SAEPFRLDFFDDEIDSIRTFDVDTQRTLQEIDQINLLPAHEFPTDSTGIEFFRSQFRAEF
GEIRRDPEHIYQQVSKGTLAAGIEYWQPLFFEQMATLFDYFPANTLFITAEQNQAQGERF
YTDAQQRFESRRVDPMRPLLPPDKLWLRIDDVNRHLKQYPAIALKAEKVRSSARQKNLAI
APVPPLTIQSQQKEPLHQLRQFIEQFKGNILFIVETEGRRETLLSLLAPLKLKPKQIHTL
AQAEEQKFALMVSPLEHGFIIEQGTPLAIICETELLGERVQQRQRDKSRTVNPDTLIRNL
AELQIGQPVVHLEHGVGRYGGLVTLENGGVKAEYLLLNYANNSKLYVPVASLHLISRYVG
GSDETAPLHKLGSEAWGKARSKAAEKIRDVAAELLDVYAQREAQKGFSFQYDREEFQQFT
ATFPFEETHDQLMAINAVISDMTQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAV
LVPTTLLAQQHFDNFKDRFANLPVNVEMLSRFKTAKEQKRVIQDLADGKVDILIGTHKII
QGDVQFHDLGLLIIDEEHRFGVRQKEKMKQLRANIDILTLTATPIPRTLNMAMNGIRDLS
IISTPPARRLTIKTFVRQTDDLVIREAILREILRGGQVYYLHNDVASIENTAEKLTALVP
EARVTVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLA
QLHQLRGRVGRSHHQAYAYLLTPPPKLMTKDAQKRLEALESLDNLGAGFILATHDLEIRG
AGELLGNEQSGQIESIGFSLYMELLERAVKALKEGREPSLDELTQQQTEIDLRVPSLLRE
DYLGDVNMRLSFYKRIAGAENTEALDELKVELIDRFGALPQATRNLLQIAQLRLDLKPLN
VIRLDANAQGGFIEFAPNADLDPTIFLQLIQRNPSVYRFDGPHKFRFSKDLTDNKVRLEF
VVDLVWELIIPR
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactcaattttttcatctcgaaattcctacccaagcgaatgatcataaaatttta
gccaatatcctgcccggcgcggatagccttgccattagcgaaattgccgcgcagtttgac
ggtctaaccgtggtggtgaccaatgacacccgaagtgcggtgcgtttggagaaagaatta
aagcaaccggcgccttccgcgttatcgcaaaacgtgacttttttccccgattgggaaacc
ctgccttatgacagtttttcgcctcatcaggatattatttccgcacgtttaagtgcctta
tttcatttgcaacagcgcaagcaaggtatttttattttacctgtcgctaccttaatgcag
cgggtttgcccgccgtcttatttgcagcataacgtattgctgattaacaaaggcgatcgt
tttgtcatcgaatcccttcgcctgcaattggagaaagcgggctatcgcgccgtggaacag
gtgctggaacatggcgaatatgcggtgcgcggcgcgttgttggatttgtttccgatggga
agtgcagagccttttcgcttagatttttttgatgatgaaattgattccattcgcactttt
gatgtggacacccagcgtacgttgcaggaaatcgaccaaatcaatttattgccggcacat
gaatttccgacggatagcacgggtattgaatttttccgtagccaatttcgggcggaattc
ggggaaatccgacgggatccggaacacatttatcaacaggtcagcaaaggcacgttggcg
gcaggtattgaatattggcaaccgttgttttttgagcaaatggcgaccttgttcgattat
ttcccggcaaatacgctgtttattaccgccgagcaaaatcaagcccaaggcgagcgtttt
tacaccgatgcgcagcagcgttttgaaagtcgtcgcgtagatcctatgcgtccgctgtta
ccgcccgataaactttggttgcgcattgatgacgtgaatcgtcatttgaagcagtatccc
gccattgcgctaaaagcggaaaaagtgcggtcgtctgcgcggcagaaaaatttagcgatt
gcgccggtgccgccgttgaccattcaatctcaacaaaaagaacctttgcatcaactgcgt
caatttattgagcaatttaaaggcaatattttatttatcgtggaaacggaagggcgccgc
gaaaccttgctgagtctgcttgcgccgttaaaactcaaaccgaaacaaattcatacttta
gcccaggcggaagaacaaaaatttgcgttaatggtcagtccgttggagcatggctttatc
attgaacaaggtactccgcttgcgattatttgtgaaacggagttgctaggcgaacgcgtg
caacaacggcaacgggacaaatcccgcacggtgaatcccgacaccttgattcgtaacctg
gcggaactgcaaatcggtcagcccgtggtgcatttggagcatggcgtagggcgctatggc
ggtttggtaacgttggaaaacggcggcgtgaaagcggaatatttgctgcttaactatgct
aacaattccaaattgtatgtgccggtggcatctttacatttgatcagccgctatgtgggc
ggttccgatgaaacggcaccgttgcacaaattaggttctgaagcctggggcaaagcacgc
agcaaagccgcggagaaaatccgcgatgtagcggcggaattgttggatgtgtacgcccaa
cgggaagcacaaaaaggcttttcgtttcaatatgatcgtgaagaatttcaacaattcacc
gcgacgtttccttttgaagaaactcatgatcagctgatggcgattaacgcggtgatttcc
gacatgacccaaccgaaagccatggaccgcttggtgtgcggcgatgtgggattcggcaaa
acggaagtggcaatgcgcgcggcgtttttggcggtgatgaatcacaaacaggtcgccgtt
ttggtgccgaccacgctgttagcgcaacaacattttgataattttaaagatcgtttcgcc
aatctgccggtaaacgtggaaatgctgtcccgttttaaaaccgccaaagaacaaaaacgg
gtgattcaggatttagccgacggcaaagtggatattctgatcggcacccataaaatcatt
caaggcgatgtacaatttcacgatctgggcttattgattatcgacgaagaacatcgcttt
ggcgtgcgccagaaagaaaaaatgaaacaattgcgcgccaatattgatattctcaccctc
accgcgacgccgattccgcgcaccttaaatatggcgatgaacggcattcgcgatctttcc
attatttctacaccgccggcgcgccgtttaaccattaaaacgttcgtgcgtcaaacggac
gatttggtcattcgcgaggcgatcttgcgtgaaattctgcgtggcgggcaggtgtattat
ttgcataacgatgtggcgagcattgaaaatacggcggaaaaactgaccgcacttgtgccg
gaagcgcgcgtcaccgtggggcacgggcaaatgcgcgagcgggagctggagcgcgtgatg
tcggatttttatcatcaacgttataacgtgttggtgtgttctaccattattgaaacgggc
atcgatgtgccgaccgctaataccattattattgaacgcgccgataatttcggcttggcg
cagttacaccagcttcgtgggcgagtagggcgttcccatcatcaagcctatgcctatttg
ctcactccgccgccaaaactgatgaccaaagacgcgcaaaaacgtttagaagccttggaa
agtctggataacctcggggcgggcttcatcttggcaacccacgatttggaaatccgtggt
gccggcgaattgctgggcaacgaacaaagcgggcaaattgaaagcatcggtttttctctt
tatatggaattgctggaacgcgccgtgaaggccctaaaagaagggcgtgaaccgtcgttg
gacgaactgacccagcaacaaacggaaatcgatttgcgcgtgccgtccctgttgcgggaa
gattatttgggcgatgtgaatatgcgcctgtctttctataaacgcattgccggcgcagaa
aatacggaagccttggacgagttaaaagtggagcttattgaccgcttcggtgcgcttcca
caagccactcgcaatttattgcaaatcgcccaattgcgtctggatttaaaaccgctcaac
gttattcgattggatgccaatgcgcagggcggctttattgagtttgcgccgaacgccgat
ttggacccgacgatctttttgcagctgatccaacgcaatccctccgtctatcgcttcgac
ggcccgcacaaattccgctttagcaaagatttaacggacaataaagtgcggttagaattt
gtggtggatttagtgtgggaattgattatcccccgataa
DBGET
integrated database retrieval system
