Aggregatibacter actinomycetemcomitans D11S-1: D11S_1895
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Entry
D11S_1895 CDS
T00993
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aat
Aggregatibacter actinomycetemcomitans D11S-1
Pathway
aat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D11S_1895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aat03019
]
D11S_1895
03009 Ribosome biogenesis [BR:
aat03009
]
D11S_1895
Enzymes [BR:
aat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D11S_1895
Messenger RNA biogenesis [BR:
aat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D11S_1895
Ribosome biogenesis [BR:
aat03009
]
Prokaryotic type
rRNA processing factors
D11S_1895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
AGK_C
Motif
Other DBs
NCBI-ProteinID:
ACX83252
LinkDB
All DBs
Position
complement(1826268..1829159)
Genome browser
AA seq
963 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSGYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERLELKDALSSLDVPEGVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKA
KAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RVRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSL
SILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHTVDILVVPNEAMETP
HFSVFRVRDGEEVNELSYNLARLHQGQDEIFVAEESLISRNIDTTPAETPVVESAAVSLS
IPMPAPEPVERKEQSGPSLLSRLLAALKGLFASEPKQEEQNKKTRNNNRNSNNNRNRRNQ
ERRNSRRNRNDNAENVVEEQTAEKAERVESRNRNQERNAKRNRKPEVIEEVINSEASTPV
SEERVEPTQRRQRRDLRKKVRLNEEEMNEVPPSKSTVAQFAENTVVEPKAEEEIVVTDVI
DLDDNAEADKGRDNSRQRRLPRHLRVNNQRRRRNTQEKSPMPLFAAVASPELASGKVWID
MGQSVQSKENSFLSVDELLEQQNQSDAGEPEQSITVTMPALDMIVEKSKNDVQPLTEFII
QPANDSVKKKVQASLQRLNNNVVSAPMEATAEVIVTMDVSDNVKFMDETDRTYVFNGRLG
TFSAVTHTKAEATLAKPSDTPITTYPVQEWQESRYYFYGKGAAGHHTAISHIYTEPTKAE
AVK
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcgactcaaaaagaagagttgcgcgttgcgttagtcgat
gggcaacgcttattcgacctggacattgagagtctggggcatgaacagaaaaaagccaat
atttacaagggaaaaattactcgggttgagccgagtttggaagccgcttttgtggattac
ggtgcagaacgtcacggttttttaccgttgaaagaaattgcacgtgaatattttccgtcg
ggttatgtatatcaaggccgcccgaatattcgcgatattatctcggaagggcaggaagtc
attgttcaggtcaacaaagaagagcgcggtaataaaggtgcggcgctgaccacctttgtt
tctttagcaggaagttatttggtaattatgccgaataacccgcgtgccggcgggatttca
cgtcgtattgaaggcgatgagcgtttggagttaaaagatgcgttgagttctttggatgtg
cctgaaggcgtgggcttaatcgtacgcaccgcgggcgtgggaaaatccccggaagaattg
caatgggacttgaaagtgctgttgcatcattgggaagccattaaacaagcgtctcaaagc
cgcccggcgccttttttaattcatcaggaaagtgatgttatcgtgcgtgccattcgcgat
tatttgcgtcgcgatattggtgaaatcctgattgatagcctgcaagtttatgaaaaagcc
aaggcgcacattaaattggttcgtccggatttcattaatcgagtgaaattataccaaggt
gaagtgccgttattcagccattatcaaattgagtcgcaaatcgaatcggcattccaacgt
gaagtgcggttgccttccggcggttctattgttattgatgtgaccgaagccttaacagcc
attgatattaactccgcccgttccacccgtggtggcgacattgaagaaaccgcgttaaac
accaaccttgaagctgccgatgaaatcgcccgtcaattgcgtttgcgcgacttgggcggt
ttaatcgtgattgactttattgatatgacgccagttcgtcatcagcgtgaagtggaaaat
cgggttcgtgatgcggtgcgccaggatcgggcgcgtattcaaattagccgaatttcccgt
ttcgggttgttggaaatgtcccgtcagcgtttgagtccgtcattaggcgaatcctctcac
cacgtttgcccgcgctgccaaggcaccggcaaaatccgtgataacgagtcactttccctt
tccattctgcgtttattggaagaagaagcgttaaaagaaaataccaaacaggttcacacc
atcgttccggtacaaatcgcgtcttacttactcaatgaaaaacggaaagccattcatagc
atcgaaaaacgccacactgtggatattctcgtggtgccgaatgaagctatggaaacaccg
cactttagtgtgttccgtgtgcgtgatggggaagaggttaatgaattaagttataactta
gccagattacatcaggggcaagatgagatctttgtggctgaagaatccctgatttcccgt
aacattgacaccacacctgcggaaacgccggtggtggaaagtgcggcggtttctttatcc
attccaatgccggcaccggaacctgttgagcgtaaagaacaaagcggtccgtctttgttg
agccgtttattggcggcgttaaaaggcttatttgcttccgaaccgaaacaggaagagcaa
aataagaaaacgcgtaataacaatagaaacagtaacaataatcgcaatcgtcgtaaccag
gaacgtcgtaatagtcgccgtaaccgtaatgacaatgcggaaaatgtggttgaagagcaa
actgcagaaaaggctgagagagttgaaagcagaaatcgcaatcaagagcgtaatgccaaa
cgtaatcgcaaacctgaagtaattgaagaggtgattaactctgaggcttccacaccggtt
agcgaagaaagggtagaaccgacacaacgtcgtcaacgtcgtgatttgcgcaaaaaagtg
cgtcttaatgaagaggaaatgaatgaggttccgccttctaaatcgacagtagcacaattt
gcagaaaacaccgttgttgagccaaaagcggaagaagagattgtagtaacggacgtgatt
gatcttgatgataatgctgaagccgataaagggcgcgataattcacgtcaacgtcgtttg
ccacgtcatttgcgcgtcaataatcagcgccgtcgtcgcaatacgcaagaaaaatcgccg
atgccattatttgcggcagtggcttcaccggaattagcgagcggtaaagtgtggatcgac
atggggcagtccgttcaatcaaaagaaaatagcttcttatctgttgatgaacttcttgag
caacaaaatcaatctgatgcaggcgaaccggagcaaagtatcactgtcactatgccggcg
ttggatatgattgttgaaaaaagtaaaaatgatgttcagccattaacggaatttattatc
caaccggcaaatgattccgttaagaaaaaagtacaagcatcgttacaacgcttaaataac
aatgtggtatccgctccaatggaagcgacagctgaagtgattgtaacgatggatgtctct
gataatgtgaaattcatggatgaaactgaccgcacttatgtttttaacgggcgtctaggg
acattctcggcagtaacccacactaaagcagaagcgactttggcgaagccttccgataca
ccgattacgacttatccggtgcaagaatggcaggaatcccgttattatttctacggtaaa
ggcgcggcagggcaccacaccgcaatcagccatatttataccgaaccgactaaagcggaa
gcggtgaaataa
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