Aggregatibacter actinomycetemcomitans D11S-1: D11S_2146
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Entry
D11S_2146 CDS
T00993
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
aat
Aggregatibacter actinomycetemcomitans D11S-1
Pathway
aat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D11S_2146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aat03019
]
D11S_2146
Enzymes [BR:
aat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D11S_2146
Messenger RNA biogenesis [BR:
aat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D11S_2146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACX83497
LinkDB
All DBs
Position
complement(2060974..2062230)
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AA seq
418 aa
AA seq
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MQQNYLSSARFADLALHPLVLQALNDKGFDFCTPIQALSLPITLRGKDVAGQAQTGTGKT
IAFLSALFHHLLTYPKQTEANQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGD
GYDKQLKAIENGVDVLIGTTGRVIDYVKQGVIRLDQIQTVVLDEADRMFDLGFIRDIRYL
LRKCPPPQQRLTMLFSATLSYKVRELAFEDMNSPEYVEIEPEQKTGQQIKEELFYPSNRD
KMPLLLTLLEEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKKF
TDGDLDILVATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACE
QYAMNLPAIEEYIGHSITVSQYDPNALLQDLPKPYRLKRQTNFSAQNNNRRKPFRAKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagaattatttaagttcggcacgtttcgccgatttagccctacatcctttggtg
ttacaggcgttgaacgacaaaggatttgatttttgtacgccgattcaggcgctctcgctg
cccattacgttacgaggcaaagatgttgccggacaggcacaaaccggcaccggaaaaaca
atcgcgtttttgtccgcacttttccatcatttattaacctacccgaaacaaacggaagcc
aatcaaccgcgcgctttgattctggcaccaacccgcgaattggcggtgcaaattgaacac
gacgcgcagattttcttaaaaacaaccaaatttaagaccgcacttgcctacggcggtgac
ggctatgacaagcaactcaaagccattgaaaacggcgtggacgtgcttatcggcaccacg
gggcgcgtaattgattatgtgaaacagggcgtgattcgtttggatcagattcaaacggtg
gtgctggacgaagcggatcgtatgttcgatttgggttttatccgtgacattcgctatttg
ttacgcaaatgcccgccgccacaacaacgcttgaccatgttgttctccgccaccttgtct
tacaaagtgcgtgaactggcttttgaagatatgaatagcccggaatatgtggaaatcgaa
cctgaacaaaaaaccgggcagcaaattaaagaagaattattttacccgtccaatcgggac
aaaatgccgttgttgctgacgctcttggaagaagaatggccggagcgctgtattgtgttt
gccaacaccaaacataaatgcgaggaaatttggggctatttggcggcggacgggcatcgc
gtgggcttattaaccggcgatgtggcgcagaaaaaacggctttccttattgaaaaaattt
accgacggcgatttggatattttagtggcgacggacgtggcggcgcgcgggctgcatatt
gcggaagtgactcatgtgttcaattacgatttgccggacgatcgggaagattatgtgcac
cgtatcgggcgtaccggacgtgccggcgaaagcggcatttccatcagcttcgcctgcgag
caatacgccatgaatttgccggcgattgaagaatatatcggacacagcattaccgtgagc
caatacgatccgaacgcgttattacaggatttgccgaagccttatcgattaaaacggcaa
accaatttcagcgcacagaataacaatcgccgcaaaccgtttcgcgcaaaacgctag
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