Aggregatibacter actinomycetemcomitans D11S-1: D11S_2147
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Entry
D11S_2147 CDS
T00993
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aat
Aggregatibacter actinomycetemcomitans D11S-1
Pathway
aat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D11S_2147 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aat03021
]
D11S_2147 (rho)
03019 Messenger RNA biogenesis [BR:
aat03019
]
D11S_2147 (rho)
Transcription machinery [BR:
aat03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D11S_2147 (rho)
Messenger RNA biogenesis [BR:
aat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D11S_2147 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_22
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
ACX83498
LinkDB
All DBs
Position
2062531..2063793
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AA seq
420 aa
AA seq
DB search
MHLTELKNMPVSDLVKLGEDQMGLENLARLRKQDIIFAILKQHAKGGEDIFGGGVLEILP
DGFGFLRSDDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQV
NDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAP
PKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRH
VQVAEMVIEKAKRAVEHKKDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKR
FFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRKIAEKRVFPAID
FNRSGTRKEDLLTTPDELQKMWILRKILNPMGEVEAMEFLIDKLAVAKTNEEFFEIMKRS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttacagaacttaaaaatatgccggtttccgatctggtgaaactgggcgaagac
caaatgggtttggaaaatttagcccgtttacgcaaacaagacattatttttgcgattttg
aaacagcacgccaaaggtggggaagatattttcggcggcggcgtgttggaaattttgccg
gacggtttcggtttcctgcgttccgacgacagttcctatttagccggcccggatgatatt
tatgtcagcccgagccagattcgtcgtttcaatttacagaccggggacaaaatcgaaggg
aaaattcgaccgccgaaagaaggcgaacgctactttgccctccttaaagttgaccaagtc
aacgacgacaaaccggaagtatcccgcagcaaaatccttttcgaaaacttaaccccatta
cacgccaactcccgtttaagaatggaacgcggcaacggttctaccgaagatttaaccgcc
cgtattttagatttggcctccccgattggtaaaggtcagcgtggtttgatcgtggcgccg
ccaaaagcgggtaaaaccatgttgctgcaaaatatcgcacaaagtatcacgcacaattac
cctgatgtcgaacttatcgtcttgctgattgatgaacgtccggaagaggtaacggaaatg
caacgttccgtgaaaggcgaagtcatcgcgtccaccttcgacgaaccggcgacccgtcac
gtccaagtggcggaaatggttattgaaaaagccaaacgtgccgtcgaacacaaaaaagac
gtagtgattttactcgattccatcactcgtttagcgcgcgcttacaacaccgtgaccccg
gcttccggcaaaattttatccggtggtgtggacgccaacgctctacatcgcccaaaacgc
ttttttggtgcggcacgtaacgtagaagaaggcggtagcttaaccattatcgccaccgcg
ctggtggataccggttcgaaaatggacgaagtgatcttcgaagaatttaaaggcaccggt
aacatggaattgcatctttcgcgtaaaatcgcggaaaaacgcgtgttcccggcaatcgac
tttaaccgttcaggcacccgtaaagaagacttgcttactacccctgacgagttacaaaaa
atgtggatcctgcgcaaaatccttaacccaatgggcgaagtggaagccatggaattcctt
atcgacaaactcgccgtggcaaaaaccaacgaagagttttttgaaattatgaaacgctcg
taa
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