Actinokineospora auranticolor: V5P93_000336
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Entry
V5P93_000336 CDS
T10991
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
aaur Actinokineospora auranticolor
Brite
KEGG Orthology (KO) [BR:
aaur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaur03032
]
V5P93_000336 (topA)
03400 DNA repair and recombination proteins [BR:
aaur03400
]
V5P93_000336 (topA)
Enzymes [BR:
aaur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
V5P93_000336 (topA)
DNA replication proteins [BR:
aaur03032
]
Prokaryotic type
DNA Topoisomerases
V5P93_000336 (topA)
DNA repair and recombination proteins [BR:
aaur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V5P93_000336 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Rep_1B
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
XGP72905
LinkDB
All DBs
Position
330083..332968
Genome browser
AA seq
961 aa
AA seq
DB search
MAGSTGTKRNGNGTGGAEPRRLVIVESPTKARKIASYLGRNFVVESSRGHIRDLPRKAAE
VPERFKGEAWSNLGVNVDNGFEPIYIVTPDKKSTVTELKGLLKDVDELYLATDGDREGEA
IAWHLLEALKPKVPVRRMVFHEITEPAIRAAAANTRDLDRDLVDAQETRRILDRLYGYEV
SPVLWKKVMPRLSAGRVQSVATRIVVQRERERMAFVAADYWDISATMDAGAAAEPPTFGS
RLLSVDGVRLAAGRDFGQDGRLKAGTEVLRLEETEARRLTEALRGAALTVSSVEEKPYTR
KPYAPFMTSTLQQEAGRKLRFGSDRTMRTAQRLYENGYITYMRTDSTTLSDTAIEAARSQ
ASDLYGPQFVHPTPRQYTRKVKNAQEAHEAIRPAGEVFRTPGQVAGELEADEFRLYELIW
QRTIASQMADVRGTTMTVRITGNAASGEECVFSASGRTITFPGFLRAYVEAVDSEAGGEA
DDAERRLPILTKGQSVTATDLSADGHTTSPPPRYTEPSLVKALEELGIGRPSTYASIINT
IQDRGYVWKKGSALVPSWIAFSVVGLLEQHFERLVDYDFTAAMEEELDGIAAGTQQRTNW
LSGFYFGGPVGPEGSVGRSGGLKKLVGSGVDNIDAKVVNSIEVFKDAEERPIVVRVGRYG
PYLEREVDGAAQRANLPEDLAPDELTVDIAEKLFSTPMEGRSLGTDPVTGHEIVAKEGRF
GPYVTEVLPEVEEPPPPAEGAKKTRAKAPAKPKPRTGSLFKSMTLDTVTIDDALKLLSLP
RVVGVDPASNEEITAQNGRYGPYLKRGTDSRSLAGEDQIFTVTLDEALKIYAEPKKRGRQ
AAAAQPPLREMGNDPVSGKPMVIKDGRFGPYVTDGEFNASLRKSDSVESITDERCAELLA
EKRAKGPAPKKTTTRAKATTAKATTAKTTAAKKTTTTAAKKTTTAKKTTTAKSATATKTQ
S
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
gtggcaggctcgactgggacgaagaggaacggcaacggcaccggcggtgccgagccacgt
cgactcgtgatcgtcgagtcgccaacgaaggcgcgcaagatcgcgtcctacctcggccgc
aacttcgtcgtcgagtcctcccggggtcacatccgcgacctgccgcgcaaggcggccgag
gtgccggagcggttcaagggcgaggcgtggtccaacctcggggtgaacgtggacaacggc
ttcgagccgatctacatcgtcaccccggacaagaagtccacggtcaccgagctcaagggc
ctgctcaaggacgtcgacgagctctacctcgcgacggacggcgaccgcgagggcgaggcc
atcgcctggcacctgctggaggcgctcaagcccaaggtgccggtgcgccggatggtcttc
cacgagatcaccgagcccgccatccgggccgccgcggccaacacccgcgacctcgaccgc
gacctggtcgacgcccaggagacccggcgcatcctcgaccggctctacggctacgaggtc
agccccgtgctgtggaagaaggtcatgccgcggctgtcggccggccgcgtgcagtcggtg
gccacccggatcgtggtgcagcgcgagcgcgagcggatggccttcgtggccgccgactac
tgggacatctccgcgaccatggacgcgggcgccgccgccgagccgcccaccttcggctcc
cggctgctctccgtcgacggcgtccggctggccgccggtcgcgacttcggccaggacggc
cgcctcaaggcgggcaccgaggtgctgcggctggaggagaccgaggcccgtcggctcacc
gaggcgctgcgcggtgccgcgctgacggtctccagcgtcgaggagaagccgtacacgcgg
aagccgtacgcgccgttcatgacctccacgctgcagcaggaggcgggccgcaagctgcgc
ttcggctcggaccgcacgatgcgcacagcccagcggctctacgagaacggctacatcacg
tacatgcgaaccgacagcaccacgctgtcggacaccgccatcgaggccgcccgcagccag
gcgtccgacctgtacggcccgcagttcgtgcacccgacgccgcgccagtacacccgcaag
gtcaagaacgcccaggaggcgcacgaggccatccgccccgctggcgaggtgttccgcacc
cccggccaggtggcgggtgagctggaggccgacgagttccgcctctacgagctgatctgg
cagcgcacgatcgcctcgcagatggccgacgtgcgcggcaccacgatgaccgtgcggatc
accggcaacgcggccagcggcgaggagtgcgtgttctccgcctccggccgcaccatcacc
ttccccggcttcctgcgcgcctacgtcgaggccgtggactccgaggccggaggcgaggcc
gacgacgccgagcgccgcctgccgatcctgaccaagggccagtcggtcaccgcgaccgac
ctgtccgccgacggccacaccaccagcccgccgccgcgctacaccgagccgagcctggtc
aaggcgctggaggagctgggcatcggtcgcccgtccacctacgcctcgatcatcaacacc
atccaggaccgcggctacgtgtggaagaagggctcggccctggtcccgtcgtggatcgcg
ttctccgtggtcgggctgctggagcagcacttcgagcggctggtcgactacgacttcacc
gccgccatggaggaggagctcgacggcatcgccgcgggcacccagcagcggaccaactgg
ctgtccgggttctacttcggcggcccggtcggccccgagggctcggtgggccgctccggc
gggctcaagaagctggtcggctccggtgtggacaacatcgacgccaaggtcgtgaactcg
atcgaggtgttcaaggacgccgaggagcgcccgatcgtggtccgggtcggccgctacggg
ccgtacctggagcgcgaggtggacggcgcggcgcagcgcgcgaacctgcccgaggacctg
gcgccggacgagctgaccgtcgacatcgccgagaagctgttctccaccccgatggagggc
cgctcgctgggcaccgacccggtcacggggcacgagatcgtggccaaggagggccgtttc
gggccgtacgtgaccgaggtgctgcccgaggtcgaggagccgccgccgcccgccgagggc
gcgaagaagacccgcgccaaggccccggccaagccgaagccgcgcaccgggtcgctgttc
aagtcgatgacgctggacacggtcaccatcgacgacgcgctcaagctgctgtcgctgccg
cgcgtggtcggggtcgacccggccagcaacgaggagatcaccgcgcagaacggccgctac
ggcccgtacctcaagcgcgggaccgactcgcggtcgctggccggtgaggaccagatcttc
accgtcacgctggacgaggcgctcaagatctacgccgagccgaagaagcgcggcaggcag
gccgccgcggcccagccgccgctgcgcgagatgggcaacgacccggtgtccggcaagccg
atggtgatcaaggacggccggttcgggccgtacgtcaccgacggcgagttcaacgcctcg
ctgcgcaagtccgacagcgtcgagtccatcaccgacgagcggtgcgccgaactgctcgcg
gagaagcgcgccaagggcccggcgcccaagaagacgaccacgcgggccaaggcgaccacg
gccaaggcgaccaccgccaagaccaccgcggccaagaagacgaccacgaccgccgccaag
aagacgacgaccgcgaagaagaccacgacggccaagagcgcgacggcgaccaagacccag
tcgtag
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