Actinokineospora auranticolor: V5P93_005491
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Entry
V5P93_005491 CDS
T10991
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aaur Actinokineospora auranticolor
Pathway
aaur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V5P93_005491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaur03019
]
V5P93_005491
Messenger RNA biogenesis [BR:
aaur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V5P93_005491
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
XGP77928
LinkDB
All DBs
Position
complement(6352228..6353877)
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AA seq
549 aa
AA seq
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MPDGALRVFALGGIGEVGRNMTVFEYADRLLIVDCGVLFPEDQQPGVDLILPDFRPIESR
LHEIDALVLTHGHEDHIGAVPFLLRLRPDLPVVGSRFTLALVAAKCREHRLDPKLREVKE
GDKVSYGEFDCEFFAVNHSIPDALAVAIRTPAGVALHTGDIKLDQLPLDGRLTDLAGFSR
LGDEGVDLFLVDSTNAEVPGFVISEREIGPVLDGVIARADQRVIVACFASHVHRVQQVLD
VAVAHGRRVALVGRSMVRNMGIAADLGLLNVPPGLLINLDEAMGMPEDEVLFVSTGSQGE
PLSALSRMARGEHRQIAIRPGDTVVLASSLIPGNENAVFNVVNGLVRLGAHVVHQGNAKV
HVSGHAPAGELLFLYNAVRPSNVMPVHGEWRHLRANAALAVKTGVPADNVVIAEDGVVVD
MVDGRAAITGRVEVGHVYVDGLSVGDVGESTLSDRLVLGEGGFIAITVVVDSATGRAVSP
PTISGRGFSDDPKALDNVVSLVEMELSHTESEGITDTHRIAQSVRRVVGRWVADTYRRRP
MIVPTVIPV
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
ctgcccgacggggcgctgcgggtgttcgcgctcggcgggatcggcgaggtcgggcgcaac
atgaccgtgttcgagtacgcggaccggctgctgatcgtcgactgcggggtgctgttcccc
gaggaccagcagcccggggtcgacctgatcctgcccgacttccggcccatcgagtcgcgg
ctgcacgagatcgacgcgctggtcctcacgcacggccacgaggaccacatcggcgccgtc
ccgttcctgctgcgcctgcgccccgacctgcccgtggtcggctcgcggttcaccctcgcc
ctggtcgcggccaagtgccgcgagcaccgcctggacccgaagctgcgcgaggtcaaggag
ggcgacaaggtctcgtacggggagttcgactgcgagttcttcgccgtcaaccactccatc
cccgacgcgctcgccgtggccatccgcacgcccgcgggcgtcgcgctgcacaccggcgac
atcaagctcgaccagctgcccctcgacggccgcctcaccgacctcgcgggcttctcccgg
ctcggcgacgagggcgtcgacctgtttttggtcgactcgaccaacgccgaggtgcccggg
ttcgtgatctccgagcgggagatcgggccggtgctcgacggggtcatcgcgcgcgccgac
cagcgggtcatcgtcgcctgcttcgccagccacgtgcaccgcgtgcagcaggtcctcgac
gtggccgtcgcgcacggcaggcgggtcgcgctggtgggccggtcgatggtgcgcaacatg
ggcatcgccgccgacctggggctgctcaacgtgccgcccggcctgctgatcaacctcgac
gaggcgatgggcatgccggaggacgaggtgctgttcgtctcgacagggtcgcagggcgag
ccgctgtcggcgctgtcgcggatggcgcgcggcgagcaccggcagatcgccatccgcccg
ggcgacaccgtggtgctggcgtcgtcgctgatcccgggcaacgagaacgcggtgttcaac
gtggtcaacgggctggtccggctgggcgcgcacgtggtccaccagggcaacgccaaggtc
cacgtctccggccacgcgcccgccggtgagctgctgttcctctacaacgcggtccggccg
agcaacgtcatgcccgtgcacggcgagtggcgccacctgcgcgcgaacgcggcgctggcg
gtcaagaccggggtgcccgcggacaacgtggtgatcgcggaggacggcgtcgtcgtcgac
atggtcgacgggcgcgcggcgatcaccggccgggtcgaggtgggccacgtgtacgtcgac
ggcctgtccgtcggcgacgtcggcgagtcgacgctgtcggaccggttggtgctgggcgag
ggcgggttcatcgcgatcaccgtcgtggtcgactcggccaccggccgcgcggtgtccccg
ccgacgatctccggccgcggcttctccgacgacccgaaggccctggacaacgtggtgtcg
ctggtggagatggagctgtcgcacaccgagtccgagggcatcaccgacacccaccgcatc
gcccagtccgtccgccgcgtcgtggggcgctgggtggcggacacgtaccgcaggcggccg
atgatcgtgccgacggtgattcccgtctga
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