Actinokineospora auranticolor: V5P93_006110
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Entry
V5P93_006110 CDS
T10991
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
aaur Actinokineospora auranticolor
Pathway
aaur03030
DNA replication
aaur03430
Mismatch repair
aaur03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aaur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V5P93_006110
03430 Mismatch repair
V5P93_006110
03440 Homologous recombination
V5P93_006110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaur03032
]
V5P93_006110
03400 DNA repair and recombination proteins [BR:
aaur03400
]
V5P93_006110
Enzymes [BR:
aaur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V5P93_006110
DNA replication proteins [BR:
aaur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V5P93_006110
DNA repair and recombination proteins [BR:
aaur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V5P93_006110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
RNase_H_2
Rv2179c-like
DUF7508
Motif
Other DBs
NCBI-ProteinID:
XGP78535
LinkDB
All DBs
Position
7086832..7088535
Genome browser
AA seq
567 aa
AA seq
DB search
MSGQLVFDELGTPLRETTFVVFDLETTGGSAEADAITEFGAVKVRGGEVIGEFATLVDPG
RGIPPEIVTLTGITNAMVHAAPRLEAVLPAFLEFAAGSVLVAHNAGFDVGFVKAACRRLG
YAWPKSTVVCTVRLGRRVLSREEAPSCRLSALAALFRATTTPIHRALADARATVDVLHGL
LERVGSLGVQSLEELLDYIPEVTAAQRRKRTLAEDVPNEPGVYLFRGPSDEVLYVGTASD
LRRRVRQYFTAGETRRRLREMVALADRVDTITCAHPLEAEVRELRLLAAHKPAYNRKSKN
PRGGWWVVLTEEPFPRLSLVRRAREGALGPFRSRGHAEEAVFALQEGTGVRPCALRIPSS
GVPGGSACALAELGRCAAPCVGGQSVEEYEPAVVAVGELVAGRNLDVLARLARGLAEHAA
AERFEQAGVDRDRMRTLIRALDKGQRLAALATVAELVAARPDSLGGWEFAVVRHGRLASA
GVARRGVAPMPVVEALVASAETVIPEDGPLRGAPAEEVSVVLRWLDKPGTRMVRCSTPWS
EPAHAAARWRPWLERADHARTSLLPRD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcagctggtgttcgacgagctcggcacgccgctgcgcgagaccaccttcgtc
gtgttcgacctggagaccaccggcggcagcgccgaggcggacgcgatcaccgagttcggc
gcggtcaaggtgcgcggcggcgaggtgatcggcgagttcgcgaccctggtcgaccccggt
cgcgggatccccccggagatcgtcacgttgaccggcatcaccaacgcgatggtgcacgcc
gcgccccggctggaggcggtgctgcccgcgttcctggagttcgccgccgggtcggtgctg
gtcgcgcacaacgccgggttcgacgtgggtttcgtcaaggccgcgtgccgcaggctgggc
tacgcctggcccaagtccacggtggtgtgcacggtgcggctgggcaggcgggtgctcagc
cgggaggaggcgccgagctgccggttgtccgcgctggccgcgctgttccgggcgacgacc
acgccgatccaccgcgcgctggccgacgcccgcgcgacggtggacgtgctgcacggcctg
ctggagcgggtcgggtcgctgggcgtgcagtcgctggaggagctgctggactacatcccg
gaggtcaccgcggcccagcgccgcaagcgcacgctggccgaggacgtgccgaacgagccg
ggcgtgtacctgttccgcggcccgtcggacgaggtcctctacgtcggcaccgccagcgac
ctgcggcgccgggtgcggcagtacttcaccgcaggcgagacccgccgcaggctgcgcgag
atggtcgccctcgccgaccgggtggacacgatcacctgcgcgcacccgctggaagccgag
gtccgcgaactgcggctgctagcggcgcacaaaccggcgtacaaccgcaagtcgaagaac
ccgcgcggcgggtggtgggtggtgctgaccgaggagccgttcccccggttatcgctggtc
cggcgcgcgcgggagggggcgttggggccgttccgcagccgggggcacgcggaggaggcg
gtgttcgcgttgcaggaggggacgggcgtgcgaccgtgcgcgctgcggatcccgtcgtcc
ggcgtgccgggcgggagcgcgtgcgccctggccgagttggggcggtgcgcggcgccgtgc
gtgggtgggcagagcgtcgaggagtacgagcccgcggtggtcgcggtgggcgagttggtg
gcgggccggaacctggacgtgttggcgcggttggcgcgggggttggccgaacacgcggcg
gcggagcggttcgagcaggccggtgtggaccgcgaccggatgcggacgctgatccgcgcg
ctggacaagggccaacgcctggcggccctggccaccgtcgcggaactggtcgccgcccgc
ccggactccctgggcggctgggagttcgcggtggtcagacacggccggttggcgtcggcg
ggggtggcgcggcgcggggtggcgccgatgccggtggtggaggccctggtggcgtcggcg
gagacggtgatcccggaggacggaccactgcggggggcaccggcggaggaggtgtccgta
gtcctgcgctggctggacaaaccggggacgcggatggtccggtgctcgaccccgtggtcc
gaacccgcccacgcggcggcccggtggcgtccttggctggaacgcgcggaccatgcccgc
acgtcgttgttgcccagggactag
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