Alteromonas australica DE170: EP12_01970
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Entry
EP12_01970 CDS
T03858
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aaus
Alteromonas australica DE170
Pathway
aaus03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aaus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EP12_01970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaus03021
]
EP12_01970
03400 DNA repair and recombination proteins [BR:
aaus03400
]
EP12_01970
Enzymes [BR:
aaus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EP12_01970
Transcription machinery [BR:
aaus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EP12_01970
DNA repair and recombination proteins [BR:
aaus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EP12_01970
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AJP42655
UniProt:
A0A075PAD4
LinkDB
All DBs
Position
444910..449082
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERGQLLNEEEYLDSLEEHGDEFDAKM
GAEAVFDLLTVLDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDDVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEGMVFTSPNEAEKAYRTG
NAELHSRVKVRISEFDIDEDGNKTEKVTLTDTTVGRAIFSLILPKGLPFEIINQAMGKKQ
ISKLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPAAKKEIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQSSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVQMTPLIEGGDVVEPLRERVL
GRVIAEDVIKPGSDEVLVERNVLLDEALVDMLEANSVDQVMVRSVITCDNDFGVCAKCYG
RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
HNAKFVRNSDSKLVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGATIAAGDIVANW
DPHSHPIVTERAAKISFADIDDSNTEMQQDELTGLTRIVVKDLSKVNSKEPKLILESDEF
GLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEVSGTIGFGKETKGKKRLVITPPDGDAYEEMIPKWRQLNVFEGEKVEKGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCIITHPGDTQFL
EGEQVEVSNVKVANREIEKHGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQKRKEQIEEMSVSAAEAEQALTEAL
NAGADEDTAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagaccgaagaattcgataatatt
cgcattggtcttgcttcacctgacatgattcgttcatggtcatttggtgaagttaaaaag
cctgaaaccattaactaccgtacgttcaagcctgagcgtgacggtctgttctgtgcgcgt
atctttggtccggtaaaagactacgaatgtctttgcggcaagtataagcgtcttaagcac
cgtggtgttatctgcgagaagtgtggcgttgaagtgacgctgactaaagttcgtcgtgag
cgtatgggccatatcgagctagctagcccagtggcacacatctggttccttaaatcactc
ccgtctcgtatcggcttaatgcttgatatgacactgcgtgatatcgaacgcgtgctttat
tttgaatcatacgtggtaaccgagccaggtatgacgaccttagagcgtggacaacttctt
aacgaagaagagtaccttgactctctagaagagcacggtgacgagttcgacgctaaaatg
ggtgccgaagcggttttcgatttgctaactgtccttgacgttgatgccgatgtagcagcc
atgcgtgaagagttaccttcaattaactctgagactaagcgtaagaaaatcactaagcgt
cttaagttactagaatcattccaacagtctggtaataagccagagtggatgatcttgaca
gtacttccggttcttccaccggatttacgtccgctagtaccactagatggcggccgtttt
gcaacgtctgaccttaacgatttataccgtcgtgttatcaaccgtaacaaccgtcttaag
cgtcttctagaccttgcggctcctgatattatcgtacgtaacgaaaaacgtatgcttcag
gaagcggtagatgcccttctagataacggtcgtcgtggtcgtgcgatcacgggttctaac
aagcgtccacttaagtcgcttgcagacatgatcaaaggtaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactactcaggccgttctgtaattaccgttggtcctaca
ctacgtcttcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccgttt
atctacggtaagcttgaaggtcgtggtttagccacaacaattaaagcagctaagaagctt
gtagagcgcgaagcaccagaggtttgggacgtactagacgacgttatccgcgaacacccg
gtactacttaaccgtgcacctacacttcaccgtttgggtatccaagcattcgaaccaaca
cttatcgaaggtaaagcgattcagcttcacccgctagtgtgtgcggcgtataacgccgac
ttcgatggtgaccaaatggcggtacacgttccgttgacaatcgaagcacagctagaagca
cgtgcgttaatgatgtctacgaacaacattctgtcaccggcgaatggtgagccaatcatc
gtaccttcacaggacgttgtattaggtctttactacttaacccgtgacaaagtaaacggc
ttaggcgaaggcatggtatttaccagcccgaacgaagcagaaaaagcataccgtacaggt
aatgctgagcttcattctcgcgttaaagtacgtatttcagaattcgacattgatgaagat
ggcaacaaaactgagaaagttacgctcactgacactacggttggtcgtgcgattttctca
ctgatcctacctaagggtctgccgtttgaaatcatcaaccaagccatgggtaaaaagcaa
atttcaaaactattgaatgcttgttaccgtacgctaggtctgaaagacacagtcattgct
gctgaccaaatcatgtataccggtttccactacgcgatgattgcgggtgcatctgttggt
atcgacgatatggttatccctgctgctaagaaagaaattatcgacgcggctgaagcagaa
gttatcgaaattcaggaacagttccaaaacggtcttgttaccgcgggtgagcgttacaac
aaagttatcgatatctggtctaatgccaacgagaaagttgcaaaggccatgatggataac
cttaagactgacatcgtaattaaccgcgatggcgaagaagaagagcaatcatcatttaac
tctgtttacatgatggctgactccggtgctcgtggtagtgccgcacagattcgtcagtta
gcgggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacaccaattacg
gcgaacttccgtgaaggtctgaacgtactacagtacttcatctctactcacggtgcgcgt
aaaggtctagcggatactgcacttaagactgctaactcgggttacctaacccgtcgtcta
gtagacgttgcacaagatttggttatcactaacgacgactgtggcacattcgaaggtgtt
caaatgacaccacttatcgaaggtggagacgttgttgagccactacgtgaacgtgtactc
ggtcgtgttatcgctgaagacgttatcaagccaggttctgatgaagtgcttgttgaacgt
aacgtattgcttgatgaagcgctagtagacatgttggaagctaactcagtggaccaagtt
atggttcgctcagtaatcacttgtgacaacgacttcggcgtatgtgctaagtgttacggt
cgtgacctagcacgtggtcacatggtaggtagcggtgaatcggttggtgttattgcagca
cagtcaatcggtgaaccaggtacacagcttaccatgcgtaccttccacatcggtggtgcg
gcatcaagagcatcagcagaaaacagcgtacaggttaaaacagcgggtagccttaagcta
cacaatgcgaagttcgtacgtaactctgatagcaaattggttatcgtttctcgttcaacc
gagcttactgttattgatgagcaaggtcgtgagaaagagcgctataaagtgccatacggt
gctgtacttagcgtggatgacggtgcaacgattgcagctggcgacattgttgctaactgg
gatccgcatagtcacccaatcgttactgaacgtgcagctaagattagcttcgctgacatt
gacgactctaacaccgagatgcagcaggatgagctgaccggtcttacacgtatcgtagtg
aaagatctttctaaggttaactctaaagagcctaagctaattctagagagcgacgagttc
ggtcttcaagaaattcgtcttccgagcttcaccactattgaagcgaaagaaggcaaagtg
gctaatgaaggtgacgtgctagcacgtatacctcaagaaagctcgaagacccgtgatatt
accggtggtctacctcgcgtagccgacctgtttgaagcgcgtaaaccgaaagagccagct
attcttgcagaagtgtcaggtactatcggctttgggaaagaaaccaaaggtaagaaacgt
cttgttatcacgccgccagacggcgacgcatacgaagagatgattcccaagtggcgtcaa
cttaacgtgtttgaaggtgagaaagtggaaaaaggtgaagttatcgccgatggtccagaa
tctccacatgatatcttgcgtctacgtggtatctcagcggtagcgaactacatcgtgaac
gaagttcaggaagtataccgtctacagggtgtaaaaattaacgataagcacattgaagtc
gttatccgtcagatgctacgtaaatgtattatcacgcacccaggcgatacccagttcctt
gaaggcgagcaggttgaagtctcgaacgttaaagtggctaaccgtgaaattgaaaaacac
ggtaagatcccagcgcagtatgaaacacaactgcttggtatcaccaaagcgtcactgtct
actgagtcatttatctcagcggcctcgttccaagaaacaacccgtgttcttaccgaagct
gcggttcaaggtaaagaagatgacctacgtggtctgaaagaaaacgtaatcgttggtcga
ctcattccagcgggtaccggtttcgcttaccacgaacgtcgtgcacaaaaacgcaaagag
caaatcgaagaaatgtcagtatctgctgcagaagcagaacaggcattaaccgaagcgcta
aatgcgggtgcagacgaagatactgccgaataa
DBGET
integrated database retrieval system
