Alteromonas australica DE170: EP12_02145
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Entry
EP12_02145 CDS
T03858
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
aaus
Alteromonas australica DE170
Brite
KEGG Orthology (KO) [BR:
aaus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aaus03016
]
EP12_02145
Enzymes [BR:
aaus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
EP12_02145
Transfer RNA biogenesis [BR:
aaus03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
EP12_02145
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AJP42682
LinkDB
All DBs
Position
complement(484544..485212)
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AA seq
222 aa
AA seq
DB search
MRCFLGLDLAVSEKLALDSWRQQALPEITSRMPCYHGDRKLGNGKLAGKKGKQKTGSREF
TNTAPYAVDPANYHITLCFLGQITPRQHEALMNELDNLAHSPFSVDLDSSGIWNGPKILF
AAPSSPPNELMQLARSARKAARRAAIEVDGREYKPHVTVVRKATAALPMPLYAPHVDVQA
SAFHLFESVSTPQGVRYPIRQSWPLKHAMTVREKLRRGITDE
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgttttctcgggttagatttagcggtaagtgaaaaactcgcgctggacagctgg
cggcaacaagctttaccagaaataacatctagaatgccctgctatcacggggacaggaag
ctcggaaacggaaaactcgcaggcaaaaagggcaaacaaaaaacgggaagccgagaattt
accaatacagcaccttatgcggtagacccagcgaattatcatattactctgtgcttttta
gggcaaattaccccaaggcagcacgaagcattaatgaatgagttggataacctagcacat
tcaccgttttctgttgaccttgatagcagtggcatttggaatggccccaaaattttattt
gccgcgccatcgtcgcctcccaatgaactcatgcagcttgctcgcagtgcgcgaaaagcg
gcacgtcgtgcagcgatagaggtggacggtcgcgaatacaaacctcatgtgactgtagta
cgtaaagccactgcggcactgcccatgcctttgtacgcgccccatgttgatgtacaggcc
tcggcgtttcacttgtttgagtcagtgtctaccccacaaggtgtgcgttaccccatccga
caaagttggccattgaagcatgctatgaccgtgcgcgaaaagttacgtaggggcatcacc
gacgaataa
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