Alteromonas australica DE170: EP12_03225
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Entry
EP12_03225 CDS
T03858
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aaus
Alteromonas australica DE170
Pathway
aaus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP12_03225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaus03019
]
EP12_03225
03009 Ribosome biogenesis [BR:
aaus03009
]
EP12_03225
Enzymes [BR:
aaus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EP12_03225
Messenger RNA biogenesis [BR:
aaus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EP12_03225
Ribosome biogenesis [BR:
aaus03009
]
Prokaryotic type
rRNA helicases
EP12_03225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJP42851
UniProt:
A0A358E2X5
LinkDB
All DBs
Position
complement(712735..714498)
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AA seq
587 aa
AA seq
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MTTTVDMTFKDLKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKQVKIASNVSTASTIRQRFCQVAPHHKLEALTRI
LEVEPFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDIL
VATDVVARGLDVERVSHVVNFDVPYDSESYVHRIGRTGRAGRQGDAILFISHREKRMLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVVEAAQDDSIESLIPIVEMIKEEAEASPE
VIMAALLKIAQGDEPLILKESDRPDLHSKPPREQRERRDGRESRDRKGKSTRTSRKPEEG
MQRYRIDVGHVHGAKPGNIVGAIANEGNINSKHIGAIEIYDNFSTVDLPAGMPKETQDKL
TGTRVAGQRLSIRAWSDTPPKRESRGGRSAEKGSRDNRGTRDKKRKN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactgtcgacatgacatttaaagatctcaaactaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccatcgcctattcaagcagaaagtattccatta
cttcttgaaggtcatgatttactcggtcaggcccagacaggaacaggaaaaaccgccgcg
tttgccctgcctatgttggcaaatattgatcctgagcaacgtaagccgcaattactggta
ctcgcaccgactcgcgaattagcgattcaggtagccgaagcgttccaagtttacgcaagt
tttagccaaaaaattaaagtactgccggtatacggcggtcagtcttatgacaaccaaatt
cgccaacttaaacgtggtgttcaggttgttgtaggtacgccgggtcgtgttatcgaccat
ataaagcgtaaaacattagatttaagcgaacttaaatttttggttctcgatgaagctgac
gaaatgctacgcatgggctttatcgatgacgtagagcttattttaagccatgcaccagaa
gagcgacaaactgcgttgttctcggcaaccatgccagggcctattaaaaagattactcag
cgttatcttaaagaccccaagcaagttaaaatcgcatcgaacgtaagtaccgcaagtacg
attcgccagcgtttttgccaagttgctccacaccataagcttgaagcgttaacccgtatt
ctggaagtggaaccttttgatggcatgattatttttgtgcgcacaaaaaccgctaccgta
gagcttgcagataaactatctgcgcgtggatacgatgttgaaccgcttaatggtgacatt
ccacagaacgcccgtgagcgtactgttgataaattgaagcaaggcaatattgacattttg
gtcgccacagacgtagttgcacgtggcctcgatgttgagcgtgtaagtcacgtggttaac
tttgacgttccttacgatagtgaatcgtatgttcaccgtattggtcgtacaggccgtgct
ggacgccaaggcgatgctattttgtttatttcgcatcgtgaaaagcgcatgctgttctct
atagagaaaactaccaagcagccgattgaagctatgcccattccttcaattagcgaaatc
aatgaaactcgccttagccgctttaaacaatctgtggttgaagctgctcaagacgatagt
attgaatcgcttattcctattgttgaaatgataaaggaagaagcggaagcgtctcctgaa
gttatcatggctgcgctacttaaaattgcccaaggtgacgaaccgcttatcttgaaagaa
agcgaccgccctgatcttcacagcaagccacctcgtgaacaacgagagcgccgtgacgga
agagaaagccgagatcgtaaaggcaagtccactcgtactagccgcaaaccagaagaaggt
atgcagcgttatagaattgatgtaggccatgtacatggtgctaagccaggtaatatcgtg
ggcgctatcgccaacgaaggtaacatcaattcgaaacacattggcgctatcgagatatac
gataacttcagtacggttgacttacctgctggtatgccaaaagagacgcaagataagctt
acgggcacccgtgttgcgggccaacgtttgtctattcgtgcttggtcagacacgccacct
aagcgtgaaagccgcggcggacgtagtgctgagaaaggtagccgtgacaatcgcggaacc
cgagacaagaaacgtaagaactaa
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