Alteromonas australica DE170: EP12_09490
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Entry
EP12_09490 CDS
T03858
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aaus
Alteromonas australica DE170
Pathway
aaus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP12_09490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaus03019
]
EP12_09490
03016 Transfer RNA biogenesis [BR:
aaus03016
]
EP12_09490
Enzymes [BR:
aaus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EP12_09490
Messenger RNA biogenesis [BR:
aaus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EP12_09490
Transfer RNA biogenesis [BR:
aaus03016
]
Prokaryotic type
tRNA degradation factors
EP12_09490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
DinB_2
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
AJP43861
LinkDB
All DBs
Position
2055516..2057627
Genome browser
AA seq
703 aa
AA seq
DB search
MTPITKSFQYGQHTVTLETGVIARQATAAVMASMDDTAVLVTVVGKKEAKADQDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVITVMSAN
PDIPTDIISMIGTSAALAISGIPFNGPIGAARVGYTNGEYILNTRVEEQADSELDLVVAG
TEGAVLMVESEADVLSEDVMLGAVMFGHEQLQTVITAVNEFAANVSIDKWDWKPEAENTT
LKEKVKALAEAEMVAAYQISDKLARKDAVTAATEKALEAILAEDEEQDKKEVLNLLHDLE
SDVVRSRILAGEPRIDGRDPKMIRALDVATGILPRTHGSAVFTRGETQAIVAATLGTERD
AQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEF
PYVVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDI
LGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAI
GGHREELSEFAPRIYTVKIDQDKIRDVIGKGGAMIRQITEESDTNIEIEDDGTIKIFATE
RAKADIAISKIEQVTAEIEVGKTYNGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNK
VTDYLKEGEMVDVKVMEIDRQNRVRLSIKELLEKPAPKSDDAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgactcctattactaaatcatttcagtatggacagcatactgtaacacttgaaacgggc
gttatcgctcgtcaggcaacagcagccgtcatggcaagtatggatgacaccgctgtatta
gttaccgttgttggtaagaaagaagcgaaagcagatcaagatttcttcccgctaacggtt
aactatcaagaaaaaacatatgctgcgggtaaaatcccaggtggtttctttaaacgtgaa
ggtcgcccttcagaaggcgaaacgctaacagctcgtttgattgaccgtcctatccgtcca
ttattcccagaagggtttaaaaacgaagtacaagttgttatcacagtcatgtctgccaac
ccagacattcctaccgatatcatctctatgattggtacttcagctgcgctagccatttct
ggcattccatttaatggcccaattggtgcagcgcgcgttggttatactaacggcgaatat
attctaaatacccgtgttgaagagcaagctgacagcgaactagatttagtggttgctggt
actgaaggcgcggtattaatggttgaatcagaagctgacgtactttctgaagacgttatg
cttggtgctgtgatgttcggtcacgagcaactacaaacggtgataacagcggtaaacgaa
tttgctgctaacgttagcatcgacaagtgggattggaagccagaagcagaaaacacaact
cttaaagagaaagtaaaagcacttgctgaagctgaaatggttgctgcgtaccaaatttct
gacaagctagcgcgtaaagatgcggtaacagctgcaacagaaaaagcgcttgaagctatc
cttgctgaagacgaagaacaagataaaaaagaagtgcttaaccttcttcatgaccttgag
tctgacgtagtacgttcacgcatcctagctggtgagcctcgtatcgacggacgtgatcct
aagatgattcgtgcgctagatgttgccacgggcattttaccacgtactcacggttctgca
gttttcactcgtggtgaaacgcaagccattgttgctgctaccctaggtacagaacgtgac
gcgcaaatgattgacgagcttcaaggtaagcgcgatagtcgtttcatgctgcattacaac
ttccctccatactgtgttggtgaaaccggtatgattggctctcctaagcgtcgtgaaatt
ggtcacggtcgtttggcgaagcgtggtattcaagctgtcatgcctagtgaagaagaattc
ccgtacgtagtacgtattgtttctgaaattacagaatcaaacggttcatcttcaatggcg
tctgtatgtggtacttcacttgcgcttatggatgcaggtgtacctattaaagcttcagtg
gctggtattgcaatgggtctcgtgaagagcgacgacaactttgttgtactttcagacatc
ctaggtgacgaagatcaccttggtgacatggactttaaagtagcgggtactactggtggt
atcactgcacttcaaatggacattaagattgaaggtattaccaaagaaatcatgcaaatt
gcccttaaacaggcaaaagaagcacgtttgcatattcttaacgtaatggacgaagctatt
ggcggtcaccgcgaagagcttagtgaattcgctccacgcatttacacagttaaaatcgat
caggataagatccgcgatgttatcggtaaaggtggcgcaatgattcgtcaaattactgaa
gagtctgatactaacattgagattgaagacgacggtacaatcaaaatctttgcaacagag
cgtgctaaagcagacatcgctattagcaagattgagcaagtcaccgctgaaattgaagtg
ggtaagacttacaacggtaagatcacacgtattgtagacttcggtgcgtttgtagaagta
cttccaggtaaagaaggtcttgttcacatttcacaaatcgctcatgagcgcgtgaacaaa
gtgacggattaccttaaagaaggtgagatggttgacgttaaggttatggaaattgatcgc
caaaatcgtgtacgtttaagcattaaagagcttctagaaaagcctgcgcctaagtctgac
gacgcagagtaa
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