Alteromonas australica DE170: EP12_11940
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Entry
EP12_11940 CDS
T03858
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
aaus
Alteromonas australica DE170
Pathway
aaus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aaus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EP12_11940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaus03400
]
EP12_11940
Enzymes [BR:
aaus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EP12_11940
DNA repair and recombination proteins [BR:
aaus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EP12_11940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AJP44274
LinkDB
All DBs
Position
complement(2589859..2593386)
Genome browser
AA seq
1175 aa
AA seq
DB search
MLALYPSNKLEHLSFLLTTLLKQQPTPLFCPETILVESPGMQHWISMQLAREQGVAMNID
FPLPVRFMWNTARAVLGSDTVPKQSPYRREVLVWRIDKLLQDSSLMALPAFEDVLRYWQR
AGSEQEQGVQRLQLATALADVYEQYLLYRPDWLFAWENNERIVFNDMEIWQSEIWRQLTQ
SEPLHPARLHQLTLDALSHGTAPSQLPQRVVVFAINTMAPQLIAFFDALAQHTDIHIFHL
NPSVNYWGDAKSDSELAQQLRMEGLEKWMSNEQSNPLLGNLGKQGRELFNLLTELDTFEI
SAFDAPSMEENTLTLSSSSEPASGLLEYIHHDILHAAPAQPKREEALKKEDDSVTIMCAH
SALREVQVLHDHLLFWLSQDKTRTPSDILVMCPAIENYAPFVDAVFHRVGTKPLRENEAV
RLPCSIADRSPMDAEPLIAAFMALLQLPDSRFGVSDIMDYVQLDAVQKRFNITQGDIDQI
LVWLKQAHIHWGLDSQHKSFVSEGVTEQDAYSWWWGLRRLLMGMLAPDKEWVVDNLLTIP
DVEGQSALVLGKLIEIVDLLGTFADQLNTPRTPAIWADVLLELRDACFKPTEEQERSWDL
IAKVAADLAARCEEAEYDYTLSLRQVRELLLNRFSSPDAGNHFMTGQVTVCSMLPMRSIP
FKKVCILGLNDSEFPRKSTPLGLDLMAGPARRLGDRSRRLEDRYLFLEAIISTRESLYLS
YQGNDVKNNSERQPSLVLAEFLDMLALGYQVPLSRYVTHAPLHPFSEANFMGRMASFEKG
WLRLAKALHSQKRSPDDGGATGEKHASVEPTTNSAPTIALSDGQEAKDLRLSSAQIARGF
KDPLAFFAQQRLGVNLSHSAELLDNSEPFETNALIRYQVLDAIFTSPMDARGNDENTLYS
EQVAEFARLRGDIPDNPVAQDELNMWKEGAHALTQAMGPVDSDVKRASFTGKHITFTASA
YEGADSLITLSAGKVNDIKALEYFISQLVFCSEEERQRYSHYPLDIYFCDWEKGETKLMK
RRCMPMDKDIAAQILLFIEALFIRLYTTPTPLYRSLFADFIPGKRKSDSASVVAMIKPDV
YHQLLDGLSDVSGMSVESEEEQDVLRKATALFETELADRLLKNWLQTHGQYTPDMANNPY
LKWLYPEGVSWRDLPYKEGFILFAMVHNAAMEEAL
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgcgctttacccctctaacaagcttgaacacctaagctttcttcttactaccttg
ctgaagcaacagcccacacccctattttgtcctgagactattttagttgaaagtcctggc
atgcagcactggatcagtatgcaattagcccgtgagcagggggtagcgatgaatatcgac
tttcctctacctgtcaggtttatgtggaataccgctagagcagtattaggcagcgatacg
gtaccaaagcagtcgccttatcgtcgagaagtcttagtgtggcgtatagacaaactactg
caagactcgtcattaatggcgctgccagcattcgaagatgtgctgcgctactggcaacga
gccggtagtgagcaagagcagggtgttcaacgattgcaattagccacagccctcgccgat
gtgtatgaacagtatttgttgtatcgcccagactggctttttgcatgggaaaacaatgag
cgtattgttttcaacgacatggaaatttggcagagtgagatatggcgtcaactgacccaa
tctgaacccttacatcctgctcgattacaccaacttaccttggatgcgctgagtcatggc
acagcgccaagccaattaccccagcgggtagtggtatttgcgattaataccatggcgccc
caacttatcgctttcttcgatgcgctcgcacaacatactgacattcatatttttcatttg
aaccctagcgttaattattggggagatgctaaaagtgacagtgaactggctcaacagcta
cgtatggaaggtcttgagaaatggatgagcaacgagcaaagcaaccctttgctaggaaat
ttaggcaagcagggtcgggaattatttaatttactcactgaattagacacgtttgagatt
agtgcatttgatgcgccctcgatggaggaaaacacgctcacgttatcgtcatcttccgag
cctgcttctgggctgttagagtatatacatcacgatattttgcacgcggccccagcccag
cctaagcgcgaagaggcattaaagaaagaggatgatagcgtcaccattatgtgcgcgcat
tctgcacttcgagaagttcaagtgttgcacgaccatttattgttttggttgtcgcaagat
aaaactcgtacgccgtcagatattctcgttatgtgtcccgcgatagaaaattatgcccct
tttgttgatgctgtgtttcatcgtgtgggaacgaaaccactgagagaaaatgaggcggtt
cgcctcccttgctctatcgcagacagaagtcctatggacgcggagccattaattgccgcc
ttcatggcattattgcaactaccagacagccgttttggtgtgtctgacattatggattac
gtgcaactggatgctgtccaaaaacggtttaatattacccaaggtgatatcgatcaaata
ttggtatggctaaaacaagcccacattcattggggattagacagccaacataaatccttt
gtttcggagggcgtcacagaacaagacgcctacagctggtggtggggacttcgccgattg
ctaatgggtatgttagcgccagataaagaatgggtggtggataacctgctgactattcca
gatgtagaggggcaatccgcccttgtactaggtaagcttatcgaaattgtcgacttactt
ggcacctttgctgaccaacttaatacgccacgaacgccggctatttgggctgatgtactt
cttgaactgcgggatgcctgttttaaaccaaccgaagaacaagagcgtagttgggatctt
atcgcgaaggtggcggctgacttagccgcacgttgtgaggaagctgaatatgattacact
ttaagcttacgtcaagtcagagaactgttacttaatcgattctcctcacccgacgcgggt
aaccattttatgacaggtcaggttacggtgtgttcaatgctgcccatgcgtagtattccc
tttaaaaaggtgtgtatcctggggttgaatgacagtgagtttcctcgaaaatcgacccca
ttagggttagacctgatggctgggccagcaaggcgtcttggcgaccggtccaggcgttta
gaagatagatatttgtttttggaagcaatcatctcaacacgagagagtctttacttaagc
taccaaggcaatgatgtaaagaataacagtgaacgacaacccagcttggtgttggcagaa
ttcctcgacatgctggcacttggctatcaagtgcccctgtctcgttatgttactcacgcg
cctttgcacccttttagtgaagccaattttatggggcgaatggccagttttgaaaagggc
tggttgcggttggccaaggcgttacacagccagaagcgaagccctgatgatgggggggct
accggggaaaagcatgcatcagtagaacctacgacgaattccgcccccactattgccctg
tctgatggtcaagaggcgaaggacttgcgtctgtctagtgcgcaaatagctcgcgggttt
aaagatccattggccttttttgctcagcagcggttgggggttaatttgtctcactctgcg
gaattgttggataacagtgagcccttcgaaactaacgctttaattcgctatcaggtattg
gacgctatttttacctcgccaatggatgctcgtggtaacgatgaaaacacgttatatagt
gaacaggtggcagaattcgcgcgcttgcgaggcgacattcctgataatcctgttgcgcaa
gacgagctgaatatgtggaaagagggggcacatgcgctcactcaagctatgggcccagta
gacagtgatgttaagcgtgccagttttaccggtaaacatattacgtttaccgccagcgct
tatgagggcgcagacagtttaatcaccctaagcgcgggtaaagtgaacgacattaaagca
cttgaatactttatatctcagttagtattttgcagcgaagaggaaagacaacgttacagc
cactatccattagatatctatttctgcgattgggaaaaaggtgagacgaaattgatgaag
cgcaggtgcatgcctatggataaagacatcgctgctcagattttattgtttatagaggcg
ctttttattcgcctctacaccacaccaaccccactttatcgtagtttgttcgccgatttc
attccaggcaagcgaaaatccgacagcgcctctgtcgttgcaatgattaagcctgacgtt
tatcaccagttgctagacgggctctcagacgtatctggtatgtcggtagaatcagaggaa
gagcaggatgttttacgaaaggcaacagcattatttgagaccgaactggctgataggcta
ttgaaaaattggttacaaacccatggtcaatataccccagatatggcaaataacccttac
ttaaagtggctttatccagagggggtaagttggcgtgacttaccgtacaaagaaggcttt
atcctgtttgccatggtgcacaatgcagcgatggaggaggcgctatga
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