Alteromonas australica DE170: EP12_17420
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Entry
EP12_17420 CDS
T03858
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
aaus
Alteromonas australica DE170
Pathway
aaus03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aaus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EP12_17420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaus03021
]
EP12_17420
03400 DNA repair and recombination proteins [BR:
aaus03400
]
EP12_17420
Enzymes [BR:
aaus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EP12_17420
Transcription machinery [BR:
aaus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EP12_17420
DNA repair and recombination proteins [BR:
aaus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EP12_17420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AJP45147
UniProt:
A0A075PA22
LinkDB
All DBs
Position
complement(3877247..3878236)
Genome browser
AA seq
329 aa
AA seq
DB search
MVGSVTEFLKPRLVEIENVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDVIEILLNLKGLAVRLEGKTEATLTLVKSGAGPVVAGDIQHDGD
VEIVNPDHVICTLTGEAEISMRVKVEMGRGYVPASTRRSSEEDDRPIGRLLVDASYSPVE
RIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRSATILAEQLDAFVDLRDVSEPE
AKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPESIAEKD
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
attgtgggttctgtgactgaattcctaaaaccgagattagttgagatcgaaaacgtttct
cctactcgtgccaaagtaactttggaaccactagagcgcggctttggccatactctaggt
aacgccctacgtcgtattttattgtcatccatgccaggatgcgcagtaaccgaggtagaa
attgatggcgttcttcacgagtacagcaccaaagaaggtgtgcaagaagatgtgattgaa
atcttgcttaatctgaaaggtttagcggttcgccttgaaggtaaaactgaggcaacccta
actctagtgaaatctggcgctggccctgttgttgctggtgatattcagcatgatggcgac
gtagaaattgttaaccctgaccacgttatttgtactttaactggcgaagctgaaatcagc
atgcgcgttaaagtagaaatgggtcgcggttatgtaccagcttctacccgtcgctcctct
gaagaagatgatcgtccaattggtcgtttgttagtagacgcttcatacagcccagttgaa
cgtattgcatacagtgttgagtctgctcgtgttgaacaacgcacagaccttgacaaattg
atcatcgacatggagacgaacggtactttagatcctgaagaagcgatccgccgttctgct
actatcctagctgaacagctagatgcattcgtagatttacgagatgtgtcagagccagaa
gcgaaagaagagaagccagaattcgatccgattctgcttcgtccagtagatgaccttgaa
ctgacagtacgttctgcaaactgtttgaaagcagaagctatccagtacattggtgacctg
gtacagcgcactgaggttgagctacttaaaacgcctaaccttggtaagaaatcgctaact
gaaatcaaagatgttctagcatctcgtggtttgtctctaggtatgcgcctagaaaactgg
ccgcctgagagcatcgctgaaaaagattaa
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