Paracidovorax citrulli: Aave_1173
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Entry
Aave_1173 CDS
T00451
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aav
Paracidovorax citrulli
Pathway
aav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aave_1173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aav03019
]
Aave_1173
03009 Ribosome biogenesis [BR:
aav03009
]
Aave_1173
Enzymes [BR:
aav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Aave_1173
Messenger RNA biogenesis [BR:
aav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Aave_1173
Ribosome biogenesis [BR:
aav03009
]
Prokaryotic type
rRNA processing factors
Aave_1173
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
ABM31765
UniProt:
A1TLC7
LinkDB
All DBs
Position
complement(1293504..1296626)
Genome browser
AA seq
1040 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAARGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQ
QFMSHVMPEHAAKVKRYRDDAALFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPRCDGTGHVRDTEGFSLQ
ILRMIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVLMVPNKTMETPK
YKLERLKHDDPRLDHIAASYKLAEEMEDPTTVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPEMPRTAGARNGAHAAAPAQPPAPAPAPAPAAPQEQGFFAWLKSLFGFGPRPAPAPVS
APVAAPAPAPAADAPRDGRRGGGRRGGRDGNGGGRDGQRENGAAEGRGRRGERGERPERA
EGEAPRNGRGPRDAEGREGRPARERDRDREGGRENGRDASVRAEGDYAPRNGREGREGGR
GRERRESGDAPRQQPLGTDAGMGAVAPDVGIEGQGAAPQERGERGPRNGERRERRERGGD
RRPRGEEGQAEFVDTSPMASLPDLDLTGGEAGSPATGSTPGEEPRRERRSRDRYGRDRRE
RAPREGAEVETAPVTETTTAQAVQDVAGEGPAQEAPRRSYFSQGGGAPAPTAAAVASEAS
HGEAPAEPAQAPAGIPAAAPAPAVAAAAVPVPVPVPVATPAPAPAAAAAVPGLPRVQAFQ
LPVDELNRIAESSGLQWVNSDAEKIAAAQAAIAAEPRPVHVPRERPPAVVLDEGPLVLVE
TRRDLRDLKLPFEQQPSSVA
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaatgccacgcagcccgaagaacggcgcctcgccatcgtggac
ggccagaagctgctggactacgagatcgagatcgagggacgcgaacaacgcaagggcaac
atctacaaggcggtcgtcacccgcgtcgagcccagcctggaagcctgcttcgtggattac
ggcgaggaccgccacggcttcctgcccttcaaggaaatctcccgccagtatttcgccgag
ggcgtttcgcccagccaggcccgcatcaacgacgtgatccgcgaaggccaggagctgctg
gttcaggtcgagaaggaagaacgcggcaacaagggcgcggccctgaccaccttcgtgtcg
ctggccggccgctacgtggtgctgatgcccaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggaccgtgccgaactcaaggaggcgatggaccagctcgagtacccg
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgctcggcgcccgagctgcaa
tgggacctgaactacctgctcaagctctggaccgccatcgacggcgccgccaggggcggc
aagggcgccttcctgatctaccaggaatcctccctggtgatccgcgcgatccgcgactac
ttcaacaacgacatcggcgacatcctcatcgatacggacgacatctatgaacaggcgcag
cagttcatgtcgcacgtcatgcccgagcatgccgccaaggtcaagcgctaccgcgacgac
gcggcgctgttcagccgcttccagatcgagcaccagatcgagtccgcctacgcccgcacg
gtgaccctgccctccggcggcgccatcgtgatcgaccacacggaagcgctggtgtccgtg
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggagaccgccacccgcacc
aacctggaagccgccgacgaggtggcccgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggagagcaagaaccgccgcgaggtcgagaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcccgcgtgcagttcggcacgatcagcaagttc
ggcctgatggaaatgagccgccagcgcctgaagccctcgctgagcgaaggcgcgcacatc
cgctgcccgcgctgcgacggcacgggccacgtgcgcgacacggaaggcttctcgctgcag
atcctgcgcatgatccaggaagagtccatgaaggacaacacggccgccgtgcactgccag
gtgccggtggaagtggcctcgttcctgctcaacgagaagcgcaccgaaatcgccaagatc
gaactcaagcagcgcgtgagcgtgctcatggtccccaacaagaccatggaaacgcccaag
tacaagctcgagcgcctgaagcacgacgacccgcgcctggaccacatcgccgcgagctac
aagctggccgaggagatggaggacccgaccacggtgacgcgccgctcccaggagccgacg
aacaaacagaccccggtgatcaagggtgtgctgcccgatgcgccggccccggtcgccgag
ccgcgccccgaaatgccgcgcacggcgggcgcacgcaacggcgcgcacgcggccgccccg
gcacagccgcctgcaccggcccccgcgccggcgccggctgcgccccaggaacagggcttc
ttcgcatggctcaagagcctcttcggtttcggaccgcgtccggctccggcaccggtgtcc
gcgccggttgcggcgcctgcccccgcccctgccgccgacgccccgcgtgacgggcgccgc
ggtggaggccggcgcggcggacgcgacggcaacggcggcggtcgtgacgggcagcgcgag
aacggtgccgcggaaggccgcggacgccgcggcgagcgcggagaacgccccgagcgtgcc
gaaggcgaagcgccacgcaacggccggggtccgcgcgatgccgagggccgcgaaggccgg
ccggcacgggagcgcgatcgcgaccgtgaaggcggacgcgagaacggacgcgatgcatcc
gttcgcgccgaaggagattacgcgccgcgtaatggccgtgaaggccgtgaaggcggccgc
ggccgcgagcgccgggagtccggcgacgctccgcgccagcagccgctgggcactgacgcc
ggcatgggggccgtggccccggacgtcggcatcgaaggccagggtgccgccccgcaggag
cgcggcgagcggggccctcgcaacggcgagcgccgggaacgccgggaacgcggcggcgac
cgccgtccgcgcggagaggaaggccaggccgagttcgtggacacgtccccgatggcctcg
ctgcccgatctggacctgaccggcggcgaagccggcagcccggccacgggctccaccccg
ggcgaggagccgcgccgcgaacgccggtcgcgcgaccgctatggacgcgaccgccgggag
cgcgcgccgcgtgaaggcgccgaggtggaaaccgcaccggtgaccgagaccaccacggcg
caggccgtgcaggacgtggccggcgaaggccctgcccaggaagcgccgcgccgcagctac
ttcagccagggtggcggcgcccccgcgcccaccgccgcggcggtggcatccgaagcctcg
cacggcgaagcgcccgcggaacctgcgcaagcccccgcaggcatcccggcggcagcgccg
gcacctgccgtggccgccgccgcggtgccggtccccgtgccagtcccggtcgccacgcca
gcgcccgcaccggccgcagccgcggccgtgccgggactgccacgcgtgcaggccttccag
ctgccggtggatgagctgaaccggatcgccgaaagctcgggcctgcagtgggtgaactcc
gatgcggagaagatcgccgccgcgcaggcagcgatcgccgcggagccccgcccggtgcat
gtgccgcgcgagcggcctccggccgtcgtgctggacgaaggtccgctggtgctcgtggaa
acacgccgagatctgcgcgacctgaagctgccgttcgagcagcagccctcgtccgtcgcc
tga
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