Paracidovorax citrulli: Aave_1259
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Entry
Aave_1259 CDS
T00451
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aav
Paracidovorax citrulli
Pathway
aav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aave_1259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aav03019
]
Aave_1259
03016 Transfer RNA biogenesis [BR:
aav03016
]
Aave_1259
Enzymes [BR:
aav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Aave_1259
Messenger RNA biogenesis [BR:
aav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Aave_1259
Transfer RNA biogenesis [BR:
aav03016
]
Prokaryotic type
tRNA degradation factors
Aave_1259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
DASH_Dad2
KH_SLS1_2
DUF5813
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ABM31850
UniProt:
A1TLL2
LinkDB
All DBs
Position
1383109..1385385
Genome browser
AA seq
758 aa
AA seq
DB search
MSMFNKVTKTFQWGDKTVVMETGEIARQATGAVLVNIDDTVVLATVVASKSAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTV
SLNPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLV
VAGTEAAVLMVESEAQQLSEDIMLGAVVFGHEQGRIAINAIHELVRDAGKPVWDWQPAAK
DEPFIAKVTQLAEEKLRAAYQIRSKQARTQALREASASVLESLKAEGADFDAVKVEALLF
DIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGT
ERDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQ
EAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGTQINIDEDGTITIA
STDSAKADEAKRRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHER
VEKVTDYLTEGQVVKVKVLETDEKGRVKLSMRALLDRPMGDSGRPAPAERGERGDRGDRG
DRPERGERRERREPAGADQQQQQQQSTGAGEHSGQMDA
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgttcaacaaggtcacgaaaacgttccagtggggcgacaagaccgtcgtcatg
gaaacgggcgagatcgcccgccaggccaccggcgccgtgctggtcaacatcgacgacacg
gtcgtgctggccacggtcgtcgcctccaagtccgccaagcccggccaggatttcttcccc
ctgacggtggactacatcgagaagacgtatgccgccggcaagatccccggcagcttcttc
aagcgcgaagccaagcccagcgaactcgagacgctgaccagccgcctgatcgaccgcccg
atccgcccgctgttccccgaaggcttctacaacgaagtccacgtggtcatccacaccgtg
tcgctgaaccccgaggtcgatgccgacatcgcggccatgatcgccgtgagcgcggccctg
tcggtgtccggcattccgttcaacggcccgatcggcgccgcgcgcgtgggctacatcaac
ggcgaatacgtgctgaacccgggccagaccgcccgcaagaactcgcagatggacctggtc
gtcgccggcaccgaagccgccgtgctgatggtcgagtccgaggcgcagcagctgtccgaa
gacatcatgctgggcgccgtggtgttcggccacgagcagggccgcatcgccatcaacgcc
atccatgaactggtgcgcgacgccggcaagcccgtgtgggactggcagcccgccgccaag
gacgagcccttcatcgccaaggtcacgcaactggccgaggagaagctgcgcgccgcctac
cagatccgcagcaagcaggcccgcacgcaggccctgcgcgaggcgtccgcttccgtgctg
gagtcgctcaaggccgaaggcgccgatttcgacgcggtgaaggtcgaggccctcctgttc
gacatcgaagccaagatcgtgcgcagccagatcctggccggcgagccccgcatcgacggc
cgcgacacgcgcaccgtgcgccccatcgagatccgcaactccgttctgccccgcacgcac
ggctccgcgctgttcacgcgcggcgagacgcaggcgctggtggtctccacgctgggcacc
gaacgcgacgcgcagcgcatcgacgcgctggccggcgagttcgaagaccgcttcatgttc
cactacaacatgcctcccttcgccaccggcgaagtgggccgcatgggctccaccaagcgc
cgcgagatcggccacggccgcctggccaagcgcgcgctggtcgccgtgctgccgacgaag
gaagagttcccctacaccatccgcgtggtgtccgagatcaccgagtccaacggttcgtcc
tcgatggcttccgtctgcggcggctgcctgtcgatgatggacgccggcgtgccgatgaag
gcccacgtggccggcatcgccatgggcctgatcaaggaagacaaccgcttcgcggtgctg
accgacatcctgggcgatgaagatcacctgggcgacatggacttcaaggtggccggcacc
acggccggcatcaccgccctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgccctggcccaggccaaggaagcccgcctgcacatcctcggcaagatgcag
gaagccatgggcgaggccaagaccgaggtctccagcttcgcgcccaagctctacacgatg
aagatcaaccccgagaagatccgcgacgtgatcggcaagggcggcgcggtgatccgcgcg
ctgacggaagagaccggcacgcagatcaacatcgacgaggacggcacgatcaccatcgcc
tccaccgacagcgcgaaggccgacgaggccaagcgccgcatcgagcagatcacggccgag
gtcgagatcggcaagatctacgaaggccccgtggtcaagatcctggacttcggcgcgctg
atcaacctgctgcccggcaaggacggcctgctgcacatcagccagatcgcccacgagcgc
gtggaaaaggtgaccgactacctgaccgaaggccaggtcgtgaaggtcaaggtgctcgag
accgacgagaagggccgcgtgaagctgtccatgcgtgcgctgctggaccgcccgatgggc
gacagcggccgtccggcgcccgccgagcgtggcgaacggggtgaccgcggtgaccgtggc
gaccgcccggaacgcggcgagcgccgtgagcgccgcgaacccgccggtgcagaccagcag
caacagcagcagcaatccactggcgcgggcgagcactccggccagatggatgcctga
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