Paracidovorax citrulli: Aave_1406
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Entry
Aave_1406 CDS
T00451
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aav
Paracidovorax citrulli
Pathway
aav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Aave_1406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aav03021
]
Aave_1406
Transcription machinery [BR:
aav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Aave_1406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ABM31997
UniProt:
A1TM09
LinkDB
All DBs
Position
complement(1541468..1543813)
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AA seq
781 aa
AA seq
DB search
MPAQKSAKSPKSAPDTAAKAASTSKTATQAAPAAKKAPSVPVNKSADKPEASEETTAKKA
SRAKAAAPAAADDDETPKKRPGRPAKAATAAAGKAPAKRGRKPKAAEDDSAGDDADLSDI
ESELEGEVEAEPAEAAPTAEKVKPLRMKISKAKERALMKEFGLDDTVLSEEDLAKRRSRL
KALITLGKTRGYLTQVEISDHLPDKLVDAETMEVVVTMLNDMGVAVYEQTPDAETLFQNN
VTPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEG
GLQAMMEAISASPATIAEILAMGEEIREGKVVISTIVDGFSNPNEADDYVAEEDFDEFDE
EDDDDGKGGSKALTKKLEELKNEALRRFDNLRGLFEKMHKIYDKEGYGTPAYMKAQHAIS
AELMTIRFTAKTIEKLCDMVRAQVDDVRKKERELRRIIVDKCGMPQETFIKDFPPNLLNL
QWVEKQAAAGKPWSAVLARNIPPVQELQQRLMDLQSRVVVPLSELKDINKRMNEGESASR
DAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAAKMEIPEDK
IRKIMKIAKEPISMETPIGDDDDSHLGDFIEDGANTAPIDAAMQAGLRDVVKDILDGLTP
REAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDS
L
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctcaaaagtccgcgaagtcgcccaagtccgcccccgataccgccgcgaaggcc
gcctccacctcgaaaaccgcgacccaggccgctcctgccgcaaagaaagctccatccgtg
cccgtgaacaagtccgccgacaagcccgaagcctccgaagaaaccaccgccaagaaggcg
agccgcgcgaaggccgcggcccctgcggcggccgatgacgacgagacgcccaagaagcgc
cccggccgcccggccaaggcagccaccgccgccgccggcaaggcccccgccaagcgcggc
cgcaagcccaaggccgccgaggacgattccgcgggcgacgacgccgacctgtcggacatc
gaatccgaactcgagggcgaggtcgaggccgagccggccgaggcggcgcccaccgccgag
aaggtcaagcccctgcgcatgaagatcagcaaggcgaaggaacgcgccttgatgaaggaa
ttcggcctggacgacaccgtcctgtccgaggaagacctggccaagcgccgctcgcgcctg
aaggccctgatcacgctgggcaagacccgtggctacctgacccaggtcgagatctccgac
cacctgcccgacaagctggtcgatgccgagaccatggaagtcgtggtcaccatgctcaac
gacatgggcgtggccgtgtacgagcagacgcccgatgccgagacgctgttccagaacaac
gtcacccccaccgccaccaccgtcgaggaagccgaggaagaagccgaggccgccctctcc
accgtggacagcgaattcggccgcaccaccgacccggtccgcatgtacatgcgcgagatg
ggcacggtggaactgctcacccgcgagggcgagatcgagatcgccaagcgcatcgaaggc
ggcctgcaggccatgatggaagccatcagcgcatcgcccgccaccatcgccgagatcctg
gcgatgggcgaggagatccgcgagggcaaggtcgtcatctccaccatcgtggacggcttc
tccaaccccaacgaggccgacgactacgtggccgaggaagacttcgacgaattcgacgaa
gaggacgacgacgacggcaagggcggctccaaggccctgaccaagaagctggaagagctc
aagaacgaagcgctgcgccggttcgacaacctgcgcgggctcttcgagaagatgcacaag
atctacgacaaggaaggctacggcacgccggcctacatgaaggcccagcacgccatctcg
gccgaactgatgaccatccgcttcacggccaagaccatcgagaagctgtgcgacatggtc
cgcgcccaggtggacgacgtgcgcaagaaggagcgcgagctgcgccgcatcatcgtggac
aagtgcggcatgccgcaggaaaccttcatcaaggacttcccgcccaacctgctgaacctg
cagtgggtcgagaagcaggccgccgccggcaagccctggagcgccgtgctcgcgcgcaac
atcccgccggtgcaggagctgcagcagcgcctgatggacctgcagtcccgcgtggtggtg
ccgctgtccgagctcaaggacatcaacaagcgcatgaacgagggcgagtcggcctcgcgc
gacgcgaagaaggaaatgatcgaggccaacctgcgcctcgtgatctccatcgccaagaag
tacaccaaccgcggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatg
aaggcggtggacaagttcgaataccgccgcggctacaagttctcgacgtacgccacgtgg
tggatccgccaggccatcacgcgctcgatcgccgaccaggcgcgcaccatccggatcccg
gtgcacatgatcgagacgatcaacaagatgaaccgcatcagccgccagcacctgcaggag
ttcggcttcgagcccgatgcgtccatcctggccgcgaagatggagatccccgaggacaag
atccgcaagatcatgaagatcgccaaggagccgatctccatggaaacgccgatcggcgac
gacgacgacagccacctgggcgacttcatcgaggacggtgccaacaccgccccgatcgac
gccgccatgcaggccggcctgcgcgacgtggtcaaggacatcctggacggcctcacgccg
cgcgaagccaaggtgctgcgcatgcgcttcggcatcgagatgtccaccgaccacacgctg
gaagaagtcggcaagcagttcgacgtgacccgcgagcgcatccgccagatcgaggccaag
gcgctgcgcaagctcaagcacccgagccgcagcgacaagctgcgcagcttcatcgattcg
ctctga
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