Paracidovorax citrulli: Aave_1567
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Entry
Aave_1567 CDS
T00451
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aav
Paracidovorax citrulli
Pathway
aav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aave_1567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aav03019
]
Aave_1567
Enzymes [BR:
aav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Aave_1567
Messenger RNA biogenesis [BR:
aav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Aave_1567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
ERCC3_RAD25_C
DUF3626
Motif
Other DBs
NCBI-ProteinID:
ABM32156
UniProt:
A1TMG8
LinkDB
All DBs
Position
complement(1732399..1733739)
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AA seq
446 aa
AA seq
DB search
MPFAALGLSPALVHAAGALGFDTPTPIQAQAIPAVLDGGDVLGRAQTGSGKTAAFGLPLL
QRLLPQAQQAGARPGPRRPGALVLVPTRELAAQVGEVLRDLAGHLPGPRLKIAIACGGVS
INPQLMALRGGADAVVATPGRLLDLVEHNALSLSQVRALVLDEADRLLDLGFAEELQRVL
ALLPAQRQNLLFSATFEPGVARLAEGLLRDPLRIEIAGAPGTAPDIAQRAIAVEAPRRTQ
LLKQLLTQEPGWTRVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRD
ERWQVLVTTDLAARGIDIAGLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTPEA
APHWRLLARRHGLQALPVEQVAGFEVALAPAAQETGATEDAPARPGKLPPGTGGIKGRRP
SKKDKLRAAAAAAAAQAGGTGNPTVD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgccctttgccgccctcggcctctcgcccgccctcgtccacgccgccggtgccctgggc
ttcgacacgcccacgcccatccaggcgcaggccattcccgccgtgctggacgggggcgac
gtgctgggccgcgcgcaaacgggctcgggcaagacggccgccttcggcctgccgctgctg
cagcggctcctgccgcaagcgcagcaggccggcgcccgccccgggccgcggcgcccgggc
gccctggtgctggtgcccacgcgcgaactggccgcccaggtgggcgaggtgctgcgcgac
ctggcgggccatctgcccgggccgcggctgaagatcgcgatcgcgtgcggcggggtgtcc
atcaacccgcagttgatggccctgcgcggcggcgcggacgcggtggtggccacgccgggc
cggctgctggacctcgtggagcacaacgccctgtcgctctcgcaggtgcgggcgctggtg
ctggacgaggccgaccggctgctggacctgggattcgccgaagagctgcagcgcgtgctc
gcattgctgccggcgcagcgccagaacctgctgttttccgccaccttcgagccgggcgtg
gcccggctggccgagggcctgttgcgcgatccgctgcgcatcgaaatcgccggagcgccc
ggcacggcgcccgacatcgcccagcgcgccatcgcggtggaagcaccgcgccgcacccag
ctgctgaagcagttgctcacgcaggagcccggctggacgcgggtgctggtgttcgtggcc
acccagtacgcggccgagcatgtcgcggaaaagctctaccagtccggcatctacgcatcg
cccttccacggcggcctgagccagggcacgcgccggcaggtgctgcaggaattccgcgac
gaacgctggcaggtgctggtgaccaccgacctggccgcgcgcggcatcgacatcgccggg
ctgccggccgtcgtcaactacgacctgccccgcgccgcggccgactacgtgcaccgcatc
ggccgcacggggcgtgccggcgccagcggcgtggcggtcagcttcgtcacccccgaggcc
gcgccccactggcggctgctcgcccggcggcacggcctgcaggcgctgccggtggagcag
gtcgcgggattcgaggtggcgctcgcgcccgctgcgcaggagaccggcgccacagaggat
gcgcccgcgcgccccggcaagctgccgccgggcacgggcggcatcaaggggcggcgcccg
agcaagaaggacaagctgcgggccgctgctgcggcggccgccgcgcaggccggcggcacc
gggaaccccacagtggattga
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