Paracidovorax citrulli: Aave_1798
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Entry
Aave_1798 CDS
T00451
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aav
Paracidovorax citrulli
Pathway
aav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aave_1798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aav03019
]
Aave_1798
Enzymes [BR:
aav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Aave_1798
Messenger RNA biogenesis [BR:
aav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Aave_1798
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Fe-ADH
AAA_22
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ABM32383
UniProt:
A1TN45
LinkDB
All DBs
Position
complement(1949484..1951283)
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AA seq
599 aa
AA seq
DB search
MTFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR
IKRGVDILVATPGRLLDLQQQGFLDLSRVEILVLDEADRMLDMGFIHDVKKVLALVPRDK
QSLLFSATFSDEIRELAGTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQ
QHNWSQVLVFTRTKFGANNVAEFLTKNGVTAMALHGNKSQSARTQALAGFKSGDIRALVA
TDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMMEIE
RFTKQEIPVQVLEGFGPEEGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARSEMMER
IRTNKAAQGERSGGGGGKSGGRGAQAGQGEGGGNGGQKPQRGRGGAQGQGQGNGPRAAHP
GNGGHPRSGNGGGGNGGGRGNRPPRSEGGHRSDDLQPRRENAHLGTQLGTHLGPTRHGSG
GGQPDPMRTSVDSMSSGRRGGGGFRSGGGGGGYGGGGGGYGGGRGGNRGPRGGGGGYGR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgacgaactgaatctggccccggccattctgaaagccgtgcacgagcagggc
tacgaaacccccacccccatccaggcccaggccatccccgccgtgctcgccgggcatgac
ctcctcgccggagcgcagaccggtaccggcaagacggccgccttcacgctgccgatgctg
caccgcctcacgcagggcggcaccgcccggcccgccggcggcatccgcgccctggtgctc
acccccacgcgcgagctggccgcgcaggtcgaggaaaacctccgcgcctacgccaagcac
ctggacgtgaagtccaccgtcatcttcggcggcgtgggcatgaacccgcagatcgaccgc
atcaagcgcggcgtggacatcctggtggccacccccggccgtctgctggatctgcagcag
cagggcttcctggacctctccagggtcgagatcctggtgctggacgaagccgaccgcatg
ctggacatgggcttcatccacgacgtgaagaaggtgctggccctggtgccccgcgacaag
cagagcctgctgttctcggccaccttcagcgacgagatccgcgagctggccggcaccctg
ctcaagaacccgcagagcatccaggtcacgccgcgcaacaccaccgtgcagcgcatcacc
caggtgatccaccccgtgggccgcggcaagaagaagcaggtgctgctgcacatcatccag
cagcacaactggagccaggtgctggtcttcacccgcaccaagttcggcgccaacaacgtg
gccgaattcctcaccaagaacggcgtcacggccatggcgctgcacggcaacaagagccag
agcgcccgcacccaggccctggccggcttcaaaagcggcgacatccgcgccctcgtggcc
accgacatcgccgcgcgcggcatcgacatcgacgagctgccgcacgtcgtcaactacgag
atccccaacgtgcccgaggactacgtccaccgcatcggccgcaccggccgcgcgggcgcc
agcggcgaggccgtgagcctggtctgcatggacgaggaaggcttcatgatggagatcgag
cgcttcaccaagcaggagatcccggtgcaggtgctcgaaggcttcggccccgaggaaggc
gagaaggccgagccgatcgccatgggccgccagaccatctggggcggcgcgggcaagccg
ccgagccgcgaggtcatgcaggcggccgccaaggctgcgcgcagcgagatgatggaacgc
atccgcaccaacaaggcagcccagggtgagcgcagcggcggcggcggaggcaagtccggc
gggcgcggcgcgcaggccggccagggcgaaggcggcggcaacggcggccagaagccccag
cgcggccgcggcggcgcgcaaggccagggccagggcaacggcccgcgcgcggcgcatccc
ggcaacggcggccatccgcgctccggcaacggtggcggcggcaatggcggcgggcgtggc
aaccgtcccccgcgcagcgagggcggccaccgctccgacgacctgcagccgcggcgcgag
aacgcccacctgggcacgcagctcggcacccacctgggccccacgcgccatggcagcggc
ggcggccagcccgacccgatgcgcaccagcgtggacagcatgtccagcggccggcgcggc
ggcggcggcttccgcagcggtggcgggggtggcggctacggcggtggtggtggcggctac
ggcggcggccgcggcggcaaccgcggtccccgtggcggcggtggcggctacgggcgctga
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