Paracidovorax citrulli: Aave_1899
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Entry
Aave_1899 CDS
T00451
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
aav
Paracidovorax citrulli
Pathway
aav02020
Two-component system
aav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Aave_1899
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Aave_1899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aav03021
]
Aave_1899
Transcription machinery [BR:
aav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Aave_1899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_IclR
HTH_38
HTH_23
HTH_3
GntR
Sigma70_r4_2
HTH_Tnp_ISL3
HTH_AraC
MarR
Phage_terminase
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
ABM32483
UniProt:
A1TNE5
LinkDB
All DBs
Position
complement(2054974..2056380)
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AA seq
468 aa
AA seq
DB search
MPTLALGARQTQTPHLSPRLQKAVQLLQMPTAEFIQSVMAAVDENPFLEEDEAAAPAAPG
PEEGPAWTAAPGSRSPQAGSGDGLSMLDREPATATLQEHLHSQLRLLRLPDRAFLLASLV
VEELSDDGYLLASLDSLCRDYGVEPEATAEELDAALRTVQSLEPAGVGARDLQECLRLQL
PAVACPLQRALCDAVLARAAEGSGPQAMRQLAARLDVPAHAVREAMERLRHLDPHPGWRH
GSQPVQYIMPDVIAHKARGQWTVSLNEAVMPRVRVHRQYQQLLQSPADAPDGPAPAPEDT
GARNAHRDLAAQLAEARWTVRHVQQRFSTVLDVARAILRRQPHFLEYGPIGMRPLALKDI
AEELGVHVSTVSRVTNNKYLQTPFGLFELKYFFSRAMTTPAGRDSSPTAIRGLVQEILAA
DDGQRPLSDVDIARQLERQGIRIARRTVTKYRQQLRIPPAEQRAAARP
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgccgacactcgctcttggagcccgacagacccagaccccgcacctttcgccccgcctc
cagaaggctgtgcaattgctgcagatgccgacggcggagttcatccagagcgtgatggct
gccgtggacgagaacccgttcctcgaggaagacgaggcggcggcacctgctgcccccggc
ccggaagaggggccggcctggaccgcggcaccgggctcccggtcgccccaggccggcagc
ggcgacggcctgtccatgctggaccgcgaaccggcgacggccacgctgcaggaacacctg
cactcgcagttgcgcctgctgcgcctgcccgaccgcgcctttctcctggcgagcctggtg
gtcgaagagttgtccgatgacggctacctgctggcctccctggactccctctgcagggac
tacggcgtggagccggaggccacggccgaggagctggacgccgcgctgcgcaccgtgcag
tccctggagcccgcgggcgtgggtgcgcgcgacctgcaggaatgcctgcgcctgcagctg
cccgcagtcgcctgcccgctgcagcgtgcgctgtgcgatgcggtactggccagggcggcg
gaagggtccgggccgcaggccatgcggcagctggcggcacgcctggatgtacccgcgcat
gccgtgcgcgaggcaatggagcggctgcggcacctcgacccccacccgggatggcggcac
gggtcccagccggtgcagtacatcatgcccgatgtcatcgcgcacaaggcccgcgggcag
tggaccgtctcgctgaacgaggccgtcatgccgcgcgtgcgcgtccatcgccagtaccag
cagttgcttcagtcgccggccgatgcgccggacgggccggcgcccgctccggaagacacc
ggagcgcgcaacgcgcaccgcgatctggcggcgcaactggccgaggcgcgctggaccgtc
cgccatgtgcagcagcgcttttccaccgtgctggatgtcgccagggcgatcctgcgccgg
cagccccacttcctggaatacggccccatcggcatgcgaccgctggcgctcaaggacatc
gcggaagaattgggggtgcatgtctccaccgtatcgcgggtgacgaacaacaagtacctg
cagacgccgttcggcttgttcgaactgaagtacttcttctcccgcgccatgaccacgccg
gcagggcgggacagttcgcccaccgccatccgcgggctcgtgcaggaaatcctggcggcg
gacgacggccagcggccgctctccgacgtggacatcgcacggcagctcgagcgccagggt
atccgcatcgcgcgccgcacggtgaccaagtaccggcagcaactgcgcattccgcccgca
gagcagcgtgccgcggcgcgtccctga
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