Paracidovorax citrulli: Aave_2519
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Entry
Aave_2519 CDS
T00451
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aav
Paracidovorax citrulli
Pathway
aav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Aave_2519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aav03400
]
Aave_2519
Enzymes [BR:
aav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Aave_2519
DNA repair and recombination proteins [BR:
aav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Aave_2519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABM33092
UniProt:
A1TQ54
LinkDB
All DBs
Position
complement(2760685..2763504)
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AA seq
939 aa
AA seq
DB search
MARRSRTSGTAQEAPRKAPQKAPPDALADYARKRDFRNTPEPGAEPGDALPRGALRFVVQ
KHWASRLHYDFRLEIDGTMKSWAVPKGPSFDPRDKRMAVQVEDHPVAYNRFEGQIPARQY
GAGRVIIWDKGYWVPLEDPARAWRAGKLKFELHGHKLQGRWTLVRMHGRGNERQPPWLLI
KERDGLERDAVEYSVVDALPDSVKSLPDLPEPAPARGRQAPAPAASSPARRTAARGKAAA
SAPAPAPEPAAGRTARAGTSPRPKKAALPAALAPQLATLVDGPPTDLAEWMFELKFDGYR
ILARIEGGEVRLITRNGNDWTHRMPGLARAVRALPVESGWIDGEIVVPDRHGIPDFQALQ
NAFESGRRPGRSAAGSPDDGAVDRSGLVFYVFDLPFLNGHDLRGLPLAERRQALRTLVAE
AGSDTVRFSDAFEASPGELIASACRLGFEGVIGKRVSSAYGSGRSADWIKLKCGQRQEFV
IGGYTDPQGTRTGLGSLLLGVHGDDGQLHYAGNVGSGFSERTLTTLLGLLRSLAADRSPF
AEGTQVGRKAHWVKPQLLAEVAFAGWTQTRHVRQAVFRGLREDKPPREIVRETPAPAATV
AGPSPTPPAAPRPASSEATPSRARSTMTSRRTASAPSPASPPSSLRVTHGDRVIDAASGT
TKLDLVRYYALVAPLMMEHLRQRPVSVVRAPEGVGGELFFQKHPEHGSVDGVRTLDPALD
PGHPPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRMAFDLDPGEGVPWDKVQEA
TTLMRVMLTELGLPGFLKTSGGKGLHVVVPIKRLYGWDAVKGFSQAVVQHMARTIPQLFV
AKSGPRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGISVPLRWDELGALSSSTEWTVA
TVEDRLREGNAPWDGYAKAAVSITQAMKMLGYEPPRGGR
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcacgacgctccaggacctccggcactgcgcaggaagcgccgcggaaagcgccgcaa
aaggcgccaccggacgccctcgcagactacgcccgcaagcgggacttccgcaacaccccc
gagcccggcgcggagccgggcgacgccctgccccggggcgcgctgcgcttcgtggtgcag
aagcactgggcgagccgcctgcactacgacttccggctggaaatcgacggcaccatgaag
agctgggcggtgcccaagggcccgagcttcgatcccagggacaagcgcatggccgtgcag
gtcgaagaccatccggtcgcctacaaccgcttcgagggccagattcccgcgcggcagtac
ggcgcgggccgcgtcatcatctgggacaagggctactgggtgccgctggaggacccggcc
cgcgcgtggcgggcgggcaagctcaagttcgaactgcacggccacaagctccagggccgg
tggacgctggtgcgcatgcacggccggggcaacgagcgccagccgccgtggctgctcatc
aaggagcgcgacggcctggagcgcgatgccgtcgagtacagcgtggtggacgccctgccg
gacagcgtgaagtcgctgcccgacctgcctgagcccgcgcccgcgcggggcaggcaagcc
cctgcccctgccgcctcatcccccgcccgcaggacggccgcccgcggcaaggctgcggcc
tcggcccccgcgccggccccggagccggcggcaggcaggactgctcgggccggaacgtcc
ccgcgcccgaagaaggcggccctgcccgcggcgctggcgccgcaactggccaccctggtg
gacggcccgcccaccgacctggccgaatggatgttcgagctcaagttcgacggctaccgc
atcctcgcccggatcgaaggcggcgaggtgcgcctcatcacccgcaacggcaacgactgg
acccaccgcatgcccggcctggcgcgcgccgtgcgtgccctgccggtggagtccggctgg
atcgatggcgaaatcgtggtgcccgaccggcacggcattccggatttccaggcgctgcag
aacgccttcgagagcgggcgccggcccggacgcagcgcggcgggcagcccggacgacggc
gcggtggaccgcagcggcctggtcttctatgtcttcgatctgcccttcctcaacggccat
gacctgcggggcctgccgctggcagagcgcaggcaggcgttgcgcacgctcgtggccgag
gccggcagcgatacggtgcgcttcagcgacgcgttcgaggcatcgcccggcgagctgatc
gcctcggcttgccggctcggcttcgagggcgtgatcggcaagcgcgtgtcgtcggcctac
gggtccggccggtcggccgactggatcaagctcaagtgcgggcagcggcaggagttcgtg
atcggtggctataccgacccgcagggcacgcgcaccggcctcggctcgctgctgctgggc
gtgcatggcgacgacgggcagttgcactatgccggcaacgtgggctccggcttcagcgag
cgcaccttgacgacgctgctcgggctgctgcgctcactcgccgcagaccgcagtcccttc
gccgaaggcacgcaggtgggccgcaaggcgcactgggtcaagccgcaactgctcgcggag
gtggccttcgcgggctggacgcagacgcgccatgtccgccaggcggtgtttcgcggcctg
cgcgaggacaagcccccgcgcgagatcgtgcgcgagacgcccgcaccggccgccacggtg
gcgggcccgtcccccaccccgccggccgctccacgcccggcttcatccgaagccacgccc
tccagggcccgctccaccatgacctcccgcagaaccgcatccgccccctcgcccgcctcc
ccgccctcttcgctgcgcgtgacccacggcgaccgcgtgatcgatgccgcgagcggaacc
accaagctggacctggtgcgctactacgcgctggtcgcgcccctgatgatggaacacctg
cgccagcgccccgtctcggtcgtgcgggctccggaaggcgtgggcggggagctcttcttc
cagaagcatccggagcacggatcggtggacggcgtgcggacgctggacccggcgctggac
cccggccatccgcccctggccgagatcgcggggccggaaggcctgccggcctgggcccag
atgaacaccatcgagttccacagctggaacgcccgcagcgaccgcatcgaccggcccgac
cggatggccttcgacctcgaccccggcgaaggcgtgccctgggacaaggtgcaggaggcc
accacgctgatgcgcgtgatgctcacggagctgggcctgccgggctttctcaagaccagc
gggggcaaggggctgcacgtggtcgtgcccatcaagcgcctgtacggctgggatgcggtg
aagggcttttcccaggcggtggtgcagcacatggcgcgcacgatcccgcagctgttcgtg
gccaagagcgggccgcgcaaccgcgtgggaaaaatcttcgtggactacctgcgcaacggc
ttcggcgccaccacggtgagcgcatggtccgcccgggcacgacccggcctgggcatttcc
gtgccgctgcgctgggatgaactgggagcgctctcgagcagcaccgaatggaccgtggcc
acggtggaagaccggctgcgcgaaggcaacgcgccctgggacggctacgccaaggcggcg
gtctccatcacgcaggccatgaagatgctcgggtacgaaccgccgcgcggcgggcggtga
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