Paracidovorax citrulli: Aave_2988
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Entry
Aave_2988 CDS
T00451
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aav
Paracidovorax citrulli
Pathway
aav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aave_2988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aav03019
]
Aave_2988
03016 Transfer RNA biogenesis [BR:
aav03016
]
Aave_2988
Enzymes [BR:
aav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Aave_2988
Messenger RNA biogenesis [BR:
aav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Aave_2988
Transfer RNA biogenesis [BR:
aav03016
]
Prokaryotic type
tRNA degradation factors
Aave_2988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ABM33555
UniProt:
A1TRG7
LinkDB
All DBs
Position
complement(3286902..3289217)
Genome browser
AA seq
771 aa
AA seq
DB search
MYIKKTKAVANVAHSDDEIEGSVQGHRDGHGFVQRDDGDADIYIPANEMRAVLHKDRVRV
RIARHDRRGRPEGRIVEIIERPQHPIIGRLLQESGVWLVAPEDKRYGQDVLIPKGATGSA
KTGQVVVVELTEPPALFGQPVGRVTEVLGEVDDPGMEIEIAVRKYGVPHEFSQEALAQAK
ALPDKVRAQDKRHRIDLTDVPLVTIDGEDARDFDDAVYCEPARVGRTKGWRLLVAIADVS
HYVETGSPIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMLVTAKG
EVHAYQFYPAVMFSHARFTYTEVAAILANTRGPEATKRRARVQDLLNLHDVYRALLSSRH
ARGAVDFETTETQIVCDDNGRIEKIVPRTRNDAHRLIEEAMLAANVCSADFIAQGGQPGL
YRVHEGPTPEKQEILRNYLKAMAVGMTIGDDPKPGDFQAIAEATKDRPDAQQIHTMLLRS
MQQAIYTPVNSGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAILGQTKYRLPALPVPGEA
HAKLAKRLAARLPAPTQQPRKPLSAAAVREVQAWEAAGLHCSANERRADEASRDVEAWLK
CKYMREHLGEEFSGLVTAATSFGIFVTLDAMYVEGLVHITELGGEYFKFDEARQELRGER
TGIRYAIGTRVRVQVSRVDLDGRRIDFRLVREGEESLPPARASRGRGGREPAEPMLPASA
DGAGAERSRNKARKGASRAARPQDAPAAPRKAAAKGSGRRSGAAKRGKSRR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
ttgtatatcaaaaaaaccaaagccgttgcaaacgtcgcgcactccgatgacgaaatcgaa
ggcagcgtgcagggccaccgcgacggccacggattcgtgcagcgcgacgacggcgatgcc
gacatctatatccccgccaacgagatgcgggcggtgctccacaaggaccgcgtgcgcgtg
cgcatcgcgcggcacgaccggcgcggccggccagagggccgcatcgtcgagatcatcgaa
cgcccccagcacccgatcatcgggcgcctgctgcaggaaagcggtgtgtggctggtggcg
ccggaagacaagcgctacggccaggacgtgctgatccccaagggcgcgaccggctcggcc
aagaccgggcaggtcgtggtggtggagctgacggagccgcccgcgctgttcgggcagccc
gtgggccgcgtcacggaagtgctgggcgaggtggacgatcccggcatggagatcgagatc
gccgtgcgcaagtacggcgtgccgcacgagttctcgcaggaggcgctggcgcaggccaag
gccctgcccgacaaggtgcgcgcgcaggacaagcgccaccgcatcgacctgaccgacgtg
cccctggtgaccatcgacggcgaagatgcccgtgacttcgacgacgccgtgtattgcgag
ccggcgcgcgtcggccgcaccaagggctggcgcctgctggtcgcgatcgccgacgtgagc
cactatgtggagacgggcagccccatcgacgtggacgcctatgaccgggccaccagcgtc
tatttcccgcgccgcgtcatcccgatgctgcccgagaagctgtccaacgggctgtgctcg
ctcaatccggaggtggagcgcctgtgcatggtgtgcgacatgctggtcaccgccaagggc
gaagtgcacgcctaccagttctatccggccgtcatgttcagccacgcgcgcttcacctat
acggaagtggccgcgatcctcgcgaacacgcgggggcccgaggcgacgaagcgccgcgcg
cgcgtgcaggacctgctgaacctgcacgacgtgtaccgtgcgctgctgtcgtcgcggcac
gcgcggggggcggtggatttcgagaccaccgagacgcagatcgtctgcgacgacaacgga
cgcatcgagaagatcgtgccgcgcacgcgcaacgatgcccaccggctgatcgaggaagcc
atgctcgcggccaacgtgtgcagcgcggacttcatcgcccagggcgggcagcccgggctg
taccgcgtgcacgagggccccacgccggagaagcaggaaatcctgcgcaattacctgaag
gccatggcggtgggcatgacgatcggtgacgatccgaagcccggcgacttccaggccatc
gcggaggccacgaaggaccgcccggacgcgcagcagatccacacgatgctgctgcgctcc
atgcagcaggccatctacacccctgtgaacagcggccatttcgggctggcctacgaggcc
tacacgcatttcaccagcccgatccggcgctaccccgacctgctggtgcaccgcgtcatc
aaggccatcctgggccagaccaaataccggctgccggcactgcccgtgccgggcgaggcg
cacgccaagctcgccaagcgcctcgccgcgcggctgccggcgccgacgcagcagccgcgc
aagccgctgtccgccgccgcggtccgcgaggtgcaggcctgggaggccgccggcctgcac
tgcagcgccaacgagcgccgggccgacgaggccagtcgcgacgtcgaggcgtggttgaag
tgcaagtacatgcgcgagcacctgggcgaggagttcagcggcctggtcacggccgcgacc
agtttcggcatcttcgtgacgctggacgcgatgtatgtcgaggggctggtgcacatcacg
gagctggggggcgagtacttcaagttcgacgaggcgcgtcaggagctgcgtggcgagcgc
acgggcatccgctatgccatcggcacgcgggtgcgcgtgcaggtcagccgcgtggacctg
gatgggcgacgcatcgacttccggctggtgcgcgagggcgaggagtcgctgccgcccgcg
cgcgcttcccgcggccgcggagggcgcgagccggcggagcccatgctcccggcatccgcc
gacggagcgggggcggagcgcagccgcaacaaggcccgcaagggcgcttcgagggctgcc
cggccgcaggacgcccccgcggcgccgcgcaaggcggcggccaagggctccggacgccgc
tccggagcggccaagcggggcaagtcgcgccgctga
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