Paracidovorax citrulli: Aave_3434
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Entry
Aave_3434 CDS
T00451
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
aav
Paracidovorax citrulli
Pathway
aav00040
Pentose and glucuronate interconversions
aav01100
Metabolic pathways
aav02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Aave_3434
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Aave_3434
Enzymes [BR:
aav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Aave_3434
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Chondroitinas_B
Motif
Other DBs
NCBI-ProteinID:
ABM33991
UniProt:
A1TSQ3
Structure
PDB
PDBj
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Position
3793109..3794623
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AA seq
504 aa
AA seq
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MAAAAAAAAALMCACGGESVTAQAAAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYT
VANRNELIQALYGNTAVIAPDGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAG
SCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPEDARACAAELQRRVVTISVPDN
TSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEY
DLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRH
GNYVTLSNNHFHDHDKAFLIGGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMV
HLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLAGPDRPARPADVANARISAA
RTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLED
TADLAARITARAGAGKLEGPAEPR
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgctgccgcggcggcggcggcgctgatgtgcgcctgcggcggcgagagtgtg
accgcgcaggctgcggccgcgcccgcaggcagcatcgattcgctgggcgcgacgggctgg
gcctcccatggcacgccgaccaccggtggacagggcgccgcggcagaaaggacctacacg
gtggcaaaccgcaacgaactcatccaggcgctctacggcaacaccgccgtgatcgcaccg
gacggttcggtgcaggggacgccggacaaggcgcccaaggtcatccgcatccggggcacc
atcgacctgaacgtggacggccagctgcgcccttacacgccggaccgctacgtggcgggc
tcctgcgcatcgtcggtgcacggctatgcgtcccaggccagcctctggtcggactacctc
gcggcctaccgcccgggcgcctggggcaatgcgcgaacggtgagcggcaagccggaagac
gcgcgggcctgcgcggcggaactgcaaaggcgcgtcgtgacgatcagcgtgccggacaac
acgtccctgctgggcatcggcacggacgcgaagatcctgcacggcaacctcatgctgggc
acgccggatgcgccggtcgccaacatcgtgatccgcaacatcaccttcgaagacgcattc
gacgacttcccccaatgggacccgacggactcctccgacggccggtggaactcggagtac
gacctcatttccgtcgcccatgccagccacgtgtggatcgaccacaacaccttcagcgac
ggcgaccgccacgaccatgccttcccttccgtgtggcacgagacggtgcacggcacggac
tacagcggcggcgatttcaaggtgcagcaccatgacggcctcgtggacgtgacccggcac
ggcaactacgtcaccctgtcgaacaaccatttccacgaccacgacaaggcattcctgatc
ggtggcaccgatgtccccggcgcggacagcggcaatccgcgcatgctgaaggtgacgttc
cacggcaaccatttccagaacctgcggcagcgccaggcccgggtccgctacgggatggtg
cacctctacaacaactactacgagaacacacgggacgcctcggccgactacccctggctc
gccggcatgacgctgggccagagcggcaaggtgcatgccgagaacaacgtggtatcgctc
gccggcccggaccggcccgcgcggcctgccgacgtggcgaacgcccggatctcggcggca
cggacgcaggactgcgcggcgctgttttcggccagcgagtgcgcctccacgttctacgac
agcggcacggtgctcaacggcgggcccgcggacctgacggccgccgtgcgctggtcgtcg
gcactggcggccgcccctgcctggaagccatcggacttctacgactacacgctggaggac
accgcggacctggcggcgcgcatcaccgcccgtgcgggagcgggcaagctcgagggtccc
gcagaaccacgctga
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