Paracidovorax citrulli: Aave_4005
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Entry
Aave_4005 CDS
T00451
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aav
Paracidovorax citrulli
Pathway
aav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aave_4005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aav03019
]
Aave_4005
03400 DNA repair and recombination proteins [BR:
aav03400
]
Aave_4005
Enzymes [BR:
aav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Aave_4005
Messenger RNA biogenesis [BR:
aav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Aave_4005
DNA repair and recombination proteins [BR:
aav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Aave_4005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABM34546
UniProt:
A1TUA8
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All DBs
Position
4444572..4446464
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AA seq
630 aa
AA seq
DB search
MSSTPSQAAARRPPSQARIQAALKQSFGLRALRAGQRDVIDRVLRGENTLAIMPTGAGKS
LCYQLPALLLAGRTVVVSPLIALMRDQCDALRERGVPAVQLHSALDAEETRAAEAAVADG
SARIVLTTPERLADAGFQALLEAGGPVDLLAVDEAHCISQWDHDFRPAFLDIAQALPRLG
RPTVLALTATAAGPVAQDIRRQLGIPAAGVVDTGTYRPNLHYRAEQLADEKEKRDRLLRT
VKESTGSGIVYTATVKAAEEVHALLAGAGESAGIYHGRMPAAERGRAQDRFMAGDLRVMV
ATNAFGLGIDKQDVRFVIHYQMPGGLDAYYQESGRAGRDGQPAECTLLFLRKDKAVQQFF
LAGRYPTPDDLDALYAALQSPPPGAHEGWTLDLLQQSLDRPRPKLQVALGLLRRRRIVTQ
KADGRLSLRRAGMDSDALVALLEDYAQKRTQDQDGLERMVFYAQTGGCRWEVLLDYFGHA
RPAQRCGTCDNCRRIAALDAQQAIANAAASSAAVPPTLAPAALATARKKPSDVPAIALVS
PGPAAAEAKPATPARPVFELGMPVRVKRYGEGTVRAIASESITVAFSDGSERCFQPEYVR
KARRRRAAANDAAAEGEAAMVGPALALRTA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccaccccctcccaggctgccgccaggcggcctcccagccaggcccgcatccag
gcggccctgaagcaatccttcggcctgcgcgccctgcgcgcgggccagcgcgacgtgatc
gaccgcgtgctgcgcggcgagaacacgctggccatcatgcccacgggcgccggcaagtcg
ctgtgctaccagttgcctgcgctgctgctcgcgggccgtacggtggtggtgtcgccgctc
atcgcgctcatgcgcgaccagtgcgacgcgctgcgcgagcgcggcgtgccggccgtgcaa
ttgcacagcgcgctggacgccgaggaaacgcgcgccgccgaggcagccgtggccgacggc
agcgcgcgcatcgtgctcaccacgcccgagcggctggccgacgccggcttccaggcgctg
ctcgaagccggcgggcccgtggacctgctggccgtggacgaggcacactgcatctcgcaa
tgggaccacgacttccgcccggccttcctcgacatcgcccaggccctgccgcgcctgggc
cgccccacggtgctggcgctcaccgcgaccgccgccggcccggtggcgcaggacatccgc
cggcagctgggcattccggccgcgggcgtggtcgataccggcacctaccggcccaacctg
cactaccgcgccgagcagctcgccgacgagaaggaaaagcgcgaccgcctgctgcgcacc
gtgaaggaatccacaggctccggcatcgtctacaccgccacggtgaaggccgcggaggag
gtgcatgcgctgctggccggtgccggcgaatccgcgggcatctaccacggccgcatgccc
gccgccgagcgtggccgggcgcaggaccgcttcatggccggcgacctgcgggtgatggtc
gccaccaacgccttcggcctgggcatcgacaagcaggacgtgcgcttcgtgatccattac
cagatgcccggcgggctggacgcgtactaccaggagtccggccgggccgggcgggacggg
cagccggccgaatgcacgctgctcttcctgcgcaaggacaaggccgtgcagcagttcttc
ctggcgggccgctacccgacgcccgacgacctcgacgcgctttacgccgcgctgcagtca
cccccgccgggcgcgcacgaaggctggacactggacctgctgcagcaatcgctggaccgg
ccgcgccccaagctgcaggtggcgctgggcctgctgcgccgccgccgcatcgtcacgcag
aaggccgacggccgcctctcgctgcgccgcgcgggcatggacagcgatgcgctggtcgcg
ctgctcgaagactacgcgcaaaagcgcacgcaggaccaggacggcctcgagcgcatggtg
ttctacgcgcagaccgggggctgccggtgggaggtgttgctggattacttcggccatgcg
cgaccggcgcagcgttgcggcacctgcgacaactgccggcggatcgctgcgctcgacgcg
cagcaggccatagcgaacgcggccgcgtcgtccgcggccgtaccgcccacgctcgcgccg
gccgcactggccacggcccgcaaaaagccgtcggacgtgccggccatcgccctggtatcg
ccaggccctgccgcggccgaggcgaagcccgccacgcccgcccgccccgtgttcgaactc
ggcatgccggtgcgtgtgaagcgctacggcgaaggcaccgtgcgcgcgatcgcatcggaa
tcgatcaccgtggcattctcggacggcagcgagcgctgcttccaacccgagtacgtgcgc
aaggcgcgcagacgccgggcggcggccaacgatgccgcggcggagggtgaagcggccatg
gtagggcctgcattggcgctgcgcaccgcttga
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