Alteromonas stellipolaris R10SW13: AVL56_00290
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Entry
AVL56_00290 CDS
T04403
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
aaw
Alteromonas stellipolaris R10SW13
Pathway
aaw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AVL56_00290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaw03400
]
AVL56_00290
Enzymes [BR:
aaw01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AVL56_00290
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AVL56_00290
DNA repair and recombination proteins [BR:
aaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AVL56_00290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
AMJ92896
LinkDB
All DBs
Position
63375..64184
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AA seq
269 aa
AA seq
DB search
MPELPEVEVSRLGVSPYLLNETIDNIIVRERRMRWPIPEDVALAIGQKVIAVKRRAKYLM
IETEAGTLILHLGMSGKLRVIDASTPVAKHDHVDIVMATGKCLRFNDPRRFGAFLWQPPG
EALKLLANLGPEPLTDDFDDARLFALSRGKKSTVKNFIMDNAVVVGVGNIYANEALFLAG
IDPRREAGKVSSARYKNLTQIIKQVLAKAIEQGGTTLKDFAQTDGNPGYFAQHLNVYGRK
GEPCEVCKTEIQSKVIGQRNTFFCKQCQR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttaccagaagtcgaagtaagccgtttgggcgtatccccttatctgctaaac
gaaactatagacaatattattgtgcgcgaacgcagaatgcgctggcctattcccgaagac
gtggcgttagctatcggacaaaaggtgatagccgttaagcgtagagcaaaatacctcatg
atcgaaaccgaagcgggtacgcttattttgcatttaggcatgtcgggtaaattgcgggtt
attgatgcgtctacacctgttgcgaaacatgatcatgttgatattgtgatggcgacaggg
aaatgcttacgttttaacgatcctaggcgctttggggccttcttatggcaacccccgggc
gaggccttgaaattacttgctaacctaggaccagagccgttgactgacgatttcgatgat
gcgcgtttgttcgctttatctagaggcaaaaaaagtaccgtgaaaaacttcatcatggac
aatgcagttgtggtgggcgtagggaatatttatgccaatgaagctttatttttagcgggt
atcgacccaagaagagaagcagggaaagtcagtagcgctcgctacaaaaaccttacgcaa
attattaagcaggtattagcaaaagcgatagagcaaggcggcactacactaaaagatttt
gcgcaaactgatgggaaccctggctactttgcacagcatttgaatgtgtatggaagaaaa
ggagagccgtgtgaggtatgcaaaacagaaatacaaagtaaggtgattggccagcgaaat
acgttcttttgtaaacagtgccagcgctag
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