Alteromonas stellipolaris R10SW13: AVL56_01035
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Entry
AVL56_01035 CDS
T04403
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aaw
Alteromonas stellipolaris R10SW13
Pathway
aaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL56_01035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaw03019
]
AVL56_01035
03400 DNA repair and recombination proteins [BR:
aaw03400
]
AVL56_01035
Enzymes [BR:
aaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AVL56_01035
Messenger RNA biogenesis [BR:
aaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVL56_01035
DNA repair and recombination proteins [BR:
aaw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AVL56_01035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CRS1_YhbY
Helicase_Sgs1
GARS_N
Motif
Other DBs
NCBI-ProteinID:
AMJ93022
LinkDB
All DBs
Position
complement(247220..249058)
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AA seq
612 aa
AA seq
DB search
MTTVIADTTISSPVFDALTPENVLKNVFGYDEFRDGQGDVIHHVCTGGDALVLLPTGGGK
SMCYQIPALIRSGTGIVVSPLISLMQDQVEQLKALGVKAAYLNSTLSQEEQASISEQMVS
NQLDLLYVSPERLLQFGFQQTLRTTDVALFAIDEAHCVSHWGHDFRHDYRALGQIKARFP
DIPVIGLTATADIATQSDILTQLQLNDPLVYKGSFDRPNIRYRVMSKYKAFEQVVTYVKQ
QEGSGIIYCNSRAKVDDLHAKLFKQGFRCAAYHAGMDADERELVQRQFLNDKIDIVVATV
AFGMGINKSNVRYVVHHDVPRSVESYYQETGRAGRDGLESEAMLLFDEKDAARVRQWIEQ
GEQADRNAIELQKFAAMEAFSEAQTCRRQVLLNYFSQFSDSACGNCDICLDPPTMIDGLV
ISQKVLSCILRLSQQASTQYLIDVLRGKQLKRLQEAGHHQLSTYGIGKDKSDSYWHNMIN
QLIHKGLIRVDITANAALRLTEAARPVLKGEVAVQLAVPRLEFKPDKKAKQAPANYDRTL
FMRLKHLRKVLAEENEVPPYVVFSDATLVDMAAKLPTTRDTMLDVSGVGQTKLSRYGDAF
MQLINDYIHREQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgactactgtaattgccgacaccactattagttctcccgtttttgatgcgctaacccct
gaaaacgttttaaaaaatgtgtttgggtacgacgaatttcgcgatggacaaggagatgtt
atccaccatgtgtgtacgggtggagatgcacttgtgctactacctactggtggcggaaag
tctatgtgctatcaaattccagcgctgatccgctctggcactggcattgtggtatcgccg
cttatctcgttaatgcaagatcaagtcgaacagttaaaagccttaggggtgaaggccgct
tacctgaattcaacacttagtcaggaagagcaagccagcatttcagagcaaatggtgtct
aaccagctagatttattgtatgtttcccctgagcgcttgcttcaatttggctttcagcaa
actcttcgaacaacagatgtcgccttgtttgctatcgatgaagcgcactgcgtatcccat
tgggggcatgatttcaggcatgactaccgtgcactcggccagattaaagcccgctttcct
gatatacctgttattgggttaacggctacagctgacatcgctacccaaagcgatatcctt
acccaactgcaacttaatgaccccttggtttataaaggcagcttcgatagaccgaatatt
cgttatcgggtgatgtcgaagtacaaagcctttgaacaagttgttacctacgttaagcaa
caagagggcagcgggattatttattgtaatagtcgcgccaaagtagacgacttacatgcc
aagctattcaagcaaggttttcgctgcgcggcttatcatgcgggtatggatgccgatgaa
cgagaactcgtacagcgtcaatttttgaacgataaaattgatattgtggtagccaccgtc
gcttttggcatgggtattaataagtcgaacgtgcgttacgttgtacaccacgatgtacct
cgaagcgtcgaaagctactatcaagaaacagggcgcgcaggacgagatggccttgagtct
gaggcaatgttgctgtttgatgaaaaagacgcagcccgggtacgtcagtggatagaacaa
ggtgagcaggccgatagaaatgccatcgaacttcaaaaatttgcggccatggaagcattt
tctgaagcccaaacctgccgtcgacaagtgctgcttaactacttttctcagtttagtgat
agcgcctgtggcaactgtgatatttgtttagatccacccaccatgattgacggcttggtc
attagccaaaaagtgctttcttgtattcttaggctttcgcagcaagcttctacgcagtat
cttattgatgtactgcgcggcaaacaactaaagcgcttgcaagaagcaggtcaccaccag
ctttcaacgtatggcattggcaaagacaaatctgacagctattggcacaacatgattaac
caacttattcataaggggttaatacgggttgatattaccgccaacgcagcacttcgatta
acagaagctgcccgcccggtgttgaaaggggaagttgcggtacaactcgcggtgcctaga
ttagagttcaagccagataaaaaggccaaacaagcaccggctaactacgaccgcacctta
tttatgcgcttgaagcacctacgtaaagtactggcagaagaaaacgaagtgccgccgtat
gtagtattcagtgatgctacactggtagacatggccgctaagctaccgaccacccgtgac
actatgttagatgtaagcggcgtaggccaaaccaaactatcgcgctatggcgacgccttt
atgcagttgataaacgattacattcatcgcgagcagtag
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