Alteromonas stellipolaris R10SW13: AVL56_02310
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Entry
AVL56_02310 CDS
T04403
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
aaw
Alteromonas stellipolaris R10SW13
Pathway
aaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL56_02310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaw03019
]
AVL56_02310
Enzymes [BR:
aaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AVL56_02310
Messenger RNA biogenesis [BR:
aaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVL56_02310
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AMJ93249
LinkDB
All DBs
Position
complement(547794..549101)
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AA seq
435 aa
AA seq
DB search
MPTHLTDTHFSDLPINSKVVDALTAANFNNCTPIQALSLPPLLEGLDIAGQAQTGTGKTI
AFLVATFHYLLSKADNDENSKSKGPRAIIMAPTRELAVQIFNDAKLLSEHTGLSLGLIYG
GEGYQSQRETLEEGVDIIIGTTGRILDYYKQNVFTLNNIQVAVLDEADRMFDLGFIKDIR
FLFRRLPPATERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSD
DDKMLLLLSLFEEEWPDKAIVFANTKYSCERVTDWLTADGHRVGLLSGDVPQKKRLGILE
DFTKGKLDILVATDVAARGLHIDSVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFA
CEKYALNLPAIEQYIQQAIPVTDYDASALLDDVNAPKARRRRTPNTRNSSRRGNGKGRGN
SGGNRGKPSNRGNSN
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgcctactcacttaactgatactcatttttccgacctgccgattaatagcaaggttgtt
gacgccttaacggcggcaaatttcaataattgtacaccaatacaggcgttatctctgcct
ccgttacttgaaggcttagatattgccggacaagctcaaacgggtacaggtaaaactatt
gccttcttggttgctacttttcattatttgctaagcaaagcagataatgacgagaacagc
aaatcaaaaggccctcgagccataataatggcaccaacgagagagttagccgttcagatt
ttcaacgatgccaaactgctcagtgagcataccggtttatcgcttggattgatttatggg
ggcgaaggttaccaaagtcaacgggaaaccctagaagaaggggtagatattattattggt
acgacaggacgcattctggattattacaaacagaacgtgtttaccttgaataatattcaa
gttgccgtacttgatgaagccgatcgtatgttcgatttaggctttattaaagatatccgc
tttttgttccgtcgcttgccgcctgctacagaacgtctaagtatgctgttttccgctaca
cttagttatcgcgttcaagaactcgcttacgagcacatgaacaacccgactcacgttcaa
gttgcgccagagcaaacgacggcgactcgggtatcgcaagagctgttctatccttctgat
gatgacaagatgctactgcttctttcattatttgaagaagaatggccagataaagccatt
gtgtttgctaataccaaatacagctgtgagcgcgtgaccgactggcttactgccgatggt
catcgtgtgggcttattaagcggtgatgtaccacagaaaaaacgcttgggtatattggaa
gactttaccaaaggtaagctagacattttagtggctacggatgttgccgcacgtggctta
catattgattctgtcacccatgtgtttaactacgatttacctgacgatgcagaagactat
gttcaccgtattggtcgaaccggtcgtgctggtcaaagcggtattgcgattagttttgca
tgtgaaaaatatgcattgaatttacctgcgattgagcagtatattcaacaagcaatccct
gtgactgactacgatgctagtgccttacttgatgacgttaatgcgcctaaagctagacgc
agacgcacgccaaacacgagaaactcgtctcgacgtggtaatggtaaaggtcgtggtaac
agcggtggaaatagaggtaaaccgtctaatcgcggaaacagtaactaa
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