Alteromonas stellipolaris R10SW13: AVL56_04910
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Entry
AVL56_04910 CDS
T04403
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
aaw
Alteromonas stellipolaris R10SW13
Pathway
aaw03030
DNA replication
aaw03430
Mismatch repair
aaw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AVL56_04910 (dnaE)
03430 Mismatch repair
AVL56_04910 (dnaE)
03440 Homologous recombination
AVL56_04910 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aaw03032
]
AVL56_04910 (dnaE)
03400 DNA repair and recombination proteins [BR:
aaw03400
]
AVL56_04910 (dnaE)
Enzymes [BR:
aaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AVL56_04910 (dnaE)
DNA replication proteins [BR:
aaw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AVL56_04910 (dnaE)
DNA repair and recombination proteins [BR:
aaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AVL56_04910 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AMJ96454
LinkDB
All DBs
Position
1159791..1163210
Genome browser
AA seq
1139 aa
AA seq
DB search
MMDGLNKVKPILGKVSEYNMPAVAITDQMNMCGLVKFYSGAHGLGIKPIIGTDFWVTNEA
FGDEPFRLTLLAMNNEGYKNITVLISKAYLRGHVAHRAVIDQDWLIEHAEGVIILSGAQL
GDVGVALTKNNTSLLAESLAFYKTHFPDRFYLELIRTGRPGEEDYLHRAVECAEREGLPV
VATNEVCFINKEGFDAHEIRVCIHDGYTLDDTRRPKRYSDQQYLRTSEEMVELFSDIPEA
IENTVEIAKRCNVTVRLDEYFLPQFPTGGMTTEDFLVKVSEEGLERRLAFLFPDEQVRAE
KRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNNIPVGPGRGSGAGSLVAYALDI
TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELYGRQAVSQIITFGTM
AAKAVVRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFAAEPRLPEVYDQDEEVKDLID
MARILEGVTRNAGKHAGGVVIAPTTITDFAPLYCDDEGNNPVTQFDKNDVETAGLVKFDF
LGLRTLTIIQWAIDMVKEGKGIDIDITSIPLADAKSFRTLLNAETTAVFQLESRGMKELI
KRLKPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDAEYQHECLQEILEPT
YGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEMAKQRGAFAEGSKNNNIDPDL
AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMSADMDNTDKIVTL
VDECSRMGLELLPPDLNAGKHKFTVDEKGRIVYGIGAIKGVGEGPIEAIIEARENQGAFK
DLFDFCAKIDIKRVNKRVLEKLVLAGALDNLGPHRAALMASLPDAIAAAGQHAKAESFGQ
SDMFGLLTTEPDEVEQAFADVPLWPEKVWLEGEKDTLGLYLTGHPINQYVEEIRHYTDGR
LVDLKPTGKEQMANAVGLVLGVRVMTNKRGRRWAIVTLDDKSARIDARFFPDTFEQYESM
LETDRILLIKGQVSFDDFSGGNTITARDVMDIVQAREKNARALALNVETQLLEPKKINQM
QSILQAFKGGSCPVHLLVTHPDAEALITCGARWFVTPEDQLLHDLKQCLGEKAVSILYH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgggcttaataaggttaagcccatacttggcaaagtatccgagtacaacatg
cctgctgtggcgattaccgaccaaatgaatatgtgtggtttggtaaagttttattctggc
gcacatgggcttggcattaaacctattattggtaccgatttctgggtgaccaatgaagcc
ttcggcgatgagccgttccgtcttaccttgcttgcgatgaataacgagggctataagaac
attacggttcttatttctaaggcctacttgcgaggtcacgttgcgcatagagcggttatc
gatcaagactggcttattgaacatgcagaaggcgtaatcatactctctggtgctcaactt
ggggatgttggtgttgcacttactaaaaataacaccagcttgttggcagaatcattggcc
ttctataaaacccatttcccagaccgtttttatcttgagcttattcgtactggtcgccct
ggtgaagaagattacttacatcgcgcggtagaatgtgccgagcgagaaggcttgcctgta
gtggcaaccaatgaagtgtgcttcattaataaagaaggttttgacgcgcatgaaatacga
gtatgtattcatgatggctacacactagatgatactcgtcgacctaagcgttacagcgac
cagcaatatcttcgtaccagcgaagaaatggtggagctgttcagtgatattcctgaggcc
atagaaaacacggttgaaatcgctaagcgatgcaacgttacagtacgattagatgaatac
tttttgccccagtttcctactggcggcatgaccactgaagattttttagtaaaagtgtcg
gaagaagggcttgagcgccgtttagcgttcctgtttcctgatgaacaagtacgggcagaa
aaacgccccgagtacgacgacaggctccgtatcgagttagaagtaatcaaccaaatgggt
ttccctggttacttccttatcgtaatggagttcattcagtggagtaaggacaacaatatt
ccagtaggcccaggtcgtggttctggtgcgggctctctagtggcttacgcattagatatt
accgaccttgatccccttgaattcgacttactattcgaacgattccttaacccagaacgg
gtatcaatgccggatttcgatgttgatttctgtatggatagacgtgatgaggttatcgac
cacgttgccgagctgtatggtcgtcaggcggtatcgcagattattacctttggtaccatg
gcggcaaaagccgtggtgcgcgatgtgggccgagtactaggtcacccttacggttttgtc
gatcgtatttcaaagcttattccaccagaccctggtatgacgcttgaaaaggcgtttgct
gccgagcctcgtttgcccgaagtgtacgaccaagacgaggaggttaaagatctcatcgat
atggcgcgcattttagaaggcgtaacgcgaaatgcaggtaaacacgctggtggtgtagtt
attgcgccaaccactattaccgattttgcgccgctatactgcgacgatgaaggtaataac
cctgttactcagttcgataaaaacgatgttgaaaccgcagggctagttaagttcgacttc
cttggattacgtacgctaaccattatccagtgggccattgatatggtgaaggaagggaag
ggtatcgacattgatattacctctattcctttggcggatgcaaaaagctttcgtaccctg
ctaaatgcggaaactaccgcggtgttccagttggaatcccgaggtatgaaagagctaata
aaacgtcttaagccagatagttttgaagatattatcgcattggtagccctatttagaccg
ggtcctttgcaatcgggcatggtagataactttatcgaccgtaagcacggccgagaagct
atttcttatcccgatgctgaataccagcacgaatgtttgcaagaaattctggagcctacc
tacggcattatcttgtatcaagaacaggtaatgcagattgcgcaggaaatggcgggctat
tccctaggtggcgccgatttgttacgtcgtgctatgggtaagaaaaagccagaagaaatg
gctaagcaacgtggcgcgttcgctgaaggctcgaagaacaataacatcgacccagatttg
gcgatgaaaattttcgacttggtagaaaaattcgccggctacgggtttaacaaatctcac
tctgctgcttacgccttggtgtcttatcaaactttatggttgaaagcccattatcctgct
gaattcatggccgcagtaatgtcggccgatatggataataccgataaaattgttaccttg
gttgatgaatgcagtcgaatgggtcttgagttattgcccccagacttaaatgcaggtaag
cataagttcaccgtcgatgaaaaaggcagaattgtttacggcattggcgccattaaaggg
gtaggtgaaggccccattgaagccattatcgaagccagagaaaaccaaggtgcgtttaaa
gatttattcgatttttgtgcaaaaattgatattaagcgcgttaataaacgggtattggaa
aaactagtacttgccggcgcgttagataatttagggcctcacagggctgcactcatggca
tctttacctgatgctatcgcagccgcagggcagcatgccaaagcggaatcttttgggcag
tcagacatgttcggattgctaacgactgagcctgatgaagtagagcaagcttttgccgat
gtgccactatggccagaaaaagtatggttagaaggtgaaaaagataccttaggtttatac
cttacagggcaccctattaaccagtacgtcgaagaaattaggcattacactgatggaagg
ctggttgacttaaaacccacaggcaaagaacaaatggccaatgctgttggcttagtgctt
ggggttagggtaatgaccaataagcgaggaagacgttgggctattgtcacattggatgat
aaaagtgcgcgaatagacgctcgttttttcccagataccttcgaacagtatgaatctatg
ctagaaactgacagaatattgctcataaagggacaggtcagctttgatgatttctctggg
ggcaatacaatcaccgcccgtgatgtaatggacattgttcaggcacgggagaaaaacgcg
agagcattggcgttaaatgttgaaacccagttgcttgaaccgaaaaagattaatcaaatg
caatctatcttgcaggcctttaaaggcggaagttgcccggtgcatttattagtaacccat
cccgatgcagaagcactgattacgtgtggtgcacggtggtttgttacaccagaagatcaa
cttttgcacgatctcaaacaatgtttgggagaaaaagccgtttcaatcctctaccattaa
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