Alteromonas stellipolaris R10SW13: AVL56_06320
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Entry
AVL56_06320 CDS
T04403
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aaw
Alteromonas stellipolaris R10SW13
Pathway
aaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL56_06320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaw03019
]
AVL56_06320
03016 Transfer RNA biogenesis [BR:
aaw03016
]
AVL56_06320
Enzymes [BR:
aaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AVL56_06320
Messenger RNA biogenesis [BR:
aaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AVL56_06320
Transfer RNA biogenesis [BR:
aaw03016
]
Prokaryotic type
tRNA degradation factors
AVL56_06320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AMJ93961
LinkDB
All DBs
Position
complement(1476001..1478112)
Genome browser
AA seq
703 aa
AA seq
DB search
MTPITKSFQYGQHTVTLETGVIARQATAAVMASMDDTAVLVTVVGKKEAKADQDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVITVMSAN
PDIPTDIISMIGTSAALAISGIPFNGPIGAARVGYTDGEYILNTRVEEQADSDLDLVVAG
TEGAVLMVESEADVLSEDVMLGAVMFGHEQLQTVVTAVKEFAANVSIDKWDWKPEAENTT
LKNKVKALAEAEMVAAYQISDKLARKDAVTAATEKARDAILAEDETQDKKEVSNLLHDLE
SDVVRSRILAGEPRIDGRDPKMIRALDVATGILPRTHGSAVFTRGETQAIVAATLGTERD
AQMIDELQGRRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEF
PYVVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDI
LGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAI
GGHREELSEFAPRIYTVKIDQDKIRDVIGKGGAMIRSITEESDTNIEIEDDGTIKIFATE
RAKADIAISKIEQVTAEIEVGKTYHGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNK
VTDYLTEGAMIDVKVMEIDRQNRVRLSIKELLEKPAPKSDDAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgactcctattactaaatcatttcagtatggacagcatactgtaacactagaaacgggc
gttatcgctcgtcaggccacagcagccgtcatggcaagtatggatgacaccgctgtatta
gttaccgttgtaggtaagaaagaagcgaaagcagatcaagatttcttcccactaacagta
aactatcaagaaaaaacatatgctgcgggtaaaatccctggtggtttcttcaagcgtgaa
ggtcgtccttctgaaggcgaaacccttacagctcgtttgattgaccgtccaatccgtcca
ttattccctgaagggtttaaaaacgaagtacaagttgttatcacggtaatgtctgctaac
ccagatatcccaactgatatcatctctatgattggtacttcagcagcactagccatttct
ggtattccatttaatggtccaattggtgcagcacgcgttggttacactgacggcgaatac
attctaaatactcgtgttgaagaacaagctgacagcgatctagatcttgttgttgctggt
actgaaggcgcggtattaatggttgaatcagaagccgatgtgctttctgaagacgttatg
cttggcgcagtaatgttcggtcacgaacaactacagacggtagtaaccgcagttaaagaa
tttgctgctaacgttagtatcgacaagtgggactggaaaccagaagcagaaaatacaacc
cttaaaaataaagtgaaagcactagctgaagctgaaatggttgctgcttaccaaatctct
gacaagcttgctcgtaaagatgcagtaactgctgcaactgaaaaagcgcgtgatgccatc
cttgctgaagacgaaacccaagacaagaaagaagtatcaaaccttcttcatgatcttgag
tctgacgtagttcgttcacgcatccttgctggcgagcctcgcatcgacggtcgtgatcct
aagatgattcgtgcactagacgttgcaacgggcattttaccacgtactcacggttctgct
gttttcactcgtggtgaaactcaagcaatcgttgctgctactttaggtacagaacgtgac
gcgcagatgattgacgagcttcaaggccgtcgtgacagccgcttcatgcttcattataac
ttccctccatactgtgttggtgaaaccggtatgattggttctccaaagcgtcgtgaaatt
ggtcacggtcgtttggcgaagcgtggtattcaagcggtaatgccaagcgaagaagaattc
ccgtacgtagtacgtattgtttctgaaattacagaatcaaacggttcatcttcaatggct
tctgtatgtggtacttcacttgcgcttatggatgcaggtgtaccaattaaagcttcagtt
gctggtattgcaatgggtctagtgaaaagcgacgaaaacttcgttgtactttcagacatc
cttggtgacgaagatcaccttggtgacatggactttaaagttgctggtactactggcggt
atcactgcattgcagatggatatcaaaattgaaggtattactaaagaaatcatgcaaatt
gcccttaaacaggcaaaagaagcacgtttgcatattcttaacgtaatggacgaagctatt
ggtggtcaccgcgaagagcttagcgaattcgcgccacgcatttatacggttaaaatcgat
caggataagatccgcgatgttatcggtaaaggcggcgcgatgattcgttcaattactgaa
gaatctgataccaacatcgaaattgaagacgatggtactatcaaaatctttgcaactgag
cgtgctaaagccgatattgctatcagcaagattgagcaagtgactgctgaaatcgaagtg
ggcaaaacttaccacggtaagattacccgtatcgtagatttcggtgcgtttgttgaagta
ttaccaggcaaagaaggcctagtacatatttctcaaatcgctcacgagcgtgttaacaaa
gtaactgactaccttactgaaggtgcgatgattgacgtgaaagtgatggaaattgaccgt
caaaaccgtgtacgtctaagcattaaagagttacttgaaaagcctgctcctaagtctgac
gacgcagagtaa
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