Alteromonas stellipolaris R10SW13: AVL56_09340
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Entry
AVL56_09340 CDS
T04403
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
aaw
Alteromonas stellipolaris R10SW13
Pathway
aaw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AVL56_09340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaw03400
]
AVL56_09340
DNA repair and recombination proteins [BR:
aaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AVL56_09340
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AVL56_09340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
UB2H
EcpC_N
AAA_30
Kinesin
UvrD-helicase
CENP-O
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AMJ94482
LinkDB
All DBs
Position
complement(2179359..2181374)
Genome browser
AA seq
671 aa
AA seq
DB search
MSKGFELHSSYKPAGDQPAAIETLVDGLESGLAAQTLLGVTGSGKTFTMANVISEVQRPT
LIMAHNKTLAAQLYGEMKDFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIE
QMRLSATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQ
YKRNDLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVVR
ATVFPKTHYVTPREKILDAIEHIKGELKSRKAQLLEINKLIEEQRISQRTQFDIEMMMEL
GYCSGIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKET
LVEYGFRLPSALDNRPLKFEEFEQICPQTVYVSATPGEYELKKTHGDIVEQVVRPTGLLD
PIIEVRPVATQVDDVLSEIHKRVALDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDI
DTVERIEIIRDLRIGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIG
RAARHINGRAILYGDKITKSMKKAMDETERRREKQVEYNKANNITPMRLNKPITDIMDLG
EGAHPASGKVRLRKVEEKKKQKKAASATELMEQISELEKQMFEYARELEFEKAASLRDDV
EALRKQVVALS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaggttttgaacttcattcaagctacaagccagccggcgatcaacctgctgcc
atagaaaccctggttgatgggttagaaagtggcctagcagcgcaaaccctgttaggggtt
accggttcgggtaaaacttttaccatggcgaatgttattagtgaagttcaaaggccaacg
ctgattatggcgcataacaaaaccttggcggcacagttatacggggaaatgaaagatttt
ttccctaacaatgccgttgagtactttgtttcttattacgactactatcagcccgaagca
tacgtacctagtactgatacttttattgagaaagatgcttcgataaacgatcacatcgag
caaatgcgtttgtctgccacaaaagcattgatggagcgccgagatgttgtgattgtcgcc
agtgtgtctgctatttatggtttgggtgatcccgagtcgtatatgaaaatgcttttgcat
ttgcgacagggcgataccatggatcagcgcgatattttgcgcagacttgccgagcttcaa
tacaagcgcaacgatttagccttcgaacggggtacgttccgcgtgcgcggtgacgtgatt
gatatcttccctgcagattcagaaaaacaagcagtgcgtgttgagctatttgacgatgag
atagataaaattagtttgttcgatccgctaacaggcgcagtcgacaaatcagttgtgcgt
gcaacggtatttccgaaaactcactatgttaccccaagagaaaaaatccttgatgccatt
gagcatataaaaggagaattgaagtctcgaaaggcgcagctgctagaaattaataagtta
atcgaagagcagcgaatttctcagcgtactcaatttgatattgagatgatgatggagctt
ggttattgctcgggcatagaaaactactcacgttatctatcgggtcgcgcacctggtgag
ccgcccccaaccttattagattactttcctgctgatggccttatgttcattgatgaatcc
cacgtaacggtttctcaaattggtgccatgtataaaggggatcgctctagaaaagaaacc
ttggtggaatatggattccgtttaccatcagcactagataaccgtccacttaaattcgaa
gaatttgagcaaatttgcccacaaacggtatacgtatcggccactcccggtgagtacgaa
cttaaaaagacccatggtgatattgtagagcaagtggtgcgcccaacagggttgttagat
cccatcattgaagtgcgccctgtcgctacccaagtggatgacgtattatcggaaattcac
aagcgagtagcgcttgatgaaagggtacttattactactctcactaagcgtatggccgaa
gatttaagtgaatacttaaatgagcatggcgttaaagtacggtatttgcattcggatatc
gacacggtagaacgcattgagattattcgcgacttgcgtattggtaagttcgatgtgctg
gtgggcattaacctacttcgtgaaggcctcgatatgcctgaagtttctctggtggcgatt
ttagatgccgataaagaaggctttttacgagccgaacgctcacttattcaaaccataggt
cgagccgcacgtcatattaacgggcgcgccattttatatggcgataaaatcacaaagtct
atgaaaaaagccatggatgaaactgaacgccgccgtgaaaaacaggttgagtacaacaaa
gccaataatataacgccgatgcgtttgaataagccgattaccgatattatggatttgggc
gaaggtgctcatcctgcctccggcaaagtaaggcttcgcaaagtagaagagaagaagaaa
cagaagaaagcagcaagtgcgacagaattaatggagcaaatttccgagcttgaaaagcag
atgtttgaatatgccagagagcttgaattcgagaaggcggcctcgttaagagatgatgtg
gaagcactccgaaaacaggttgttgcactgtcttaa
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