Alteromonas stellipolaris R10SW13: AVL56_13320
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Entry
AVL56_13320 CDS
T04403
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
aaw
Alteromonas stellipolaris R10SW13
Pathway
aaw03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
aaw00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
AVL56_13320 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaw03019
]
AVL56_13320 (rnc)
03009 Ribosome biogenesis [BR:
aaw03009
]
AVL56_13320 (rnc)
03036 Chromosome and associated proteins [BR:
aaw03036
]
AVL56_13320 (rnc)
Enzymes [BR:
aaw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
AVL56_13320 (rnc)
Messenger RNA biogenesis [BR:
aaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AVL56_13320 (rnc)
Ribosome biogenesis [BR:
aaw03009
]
Eukaryotic type
90S particles
RNase
AVL56_13320 (rnc)
Prokaryotic type
rRNA processing factors
AVL56_13320 (rnc)
Chromosome and associated proteins [BR:
aaw03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
AVL56_13320 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
AMJ95183
LinkDB
All DBs
Position
complement(3106287..3106976)
Genome browser
AA seq
229 aa
AA seq
DB search
MQGIDKYIRLSKALGYTFNNEALLEQALTHRSAAKQHNERLEFLGDAILGMVIGETLFKR
FPDVPEGKLTRMRSTLVKGDTLAELAREASMGELLHLGPGELKSGGHRRSSILADAVEAV
LGAIYLDSGMDEVCNVIYHLWESRIEALNPNAHPKDSKTRLQEYLQGRKLPLPSYEVISI
SGKDHAQIFEVSCTVTTLDKPVSASGNSRRKAEQEAARLTLETLDDTAK
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atgcagggtattgataaatatattcgcttgagtaaagcgttagggtacacatttaataat
gaagccttgctagagcaagcgctgacccacagaagtgcagcaaagcagcacaatgaaaga
ttagagtttttaggtgatgctattttaggtatggtcataggtgaaaccttgtttaagcgt
ttccccgatgtgcctgaaggtaagcttacccgtatgcggtcaaccttagtaaaaggtgat
acgttggccgaattggcccgtgaagcgagcatgggtgaactacttcaccttggtcctggt
gaacttaaaagtggcggtcatcgtcgcagttcaatattggcagacgcagtagaagctgtg
ttaggcgcaatctacttggactcagggatggatgaggtctgtaatgttatataccattta
tgggaaagccgtattgaagcgttaaatcctaacgcgcaccctaaagacagtaaaacccgt
cttcaagagtacctgcaaggtcgtaagctaccattaccgtcttatgaagttatctctatc
tcagggaaagatcacgctcaaatttttgaagtgagctgcacagtgacaacgttagataag
cccgtttcggcttctggaaatagccgaagaaaagccgagcaggaagcagcaagacttacc
ttggagacactcgatgacacagccaaatga
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