KEGG   Alteromonas stellipolaris R10SW13: AVL56_18120
Entry
AVL56_18120       CDS       T04403                                 
Name
(GenBank) DNA ligase-associated DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
aaw  Alteromonas stellipolaris R10SW13
Brite
KEGG Orthology (KO) [BR:aaw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aaw03400]
    AVL56_18120
Enzymes [BR:aaw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AVL56_18120
    5.6.2.6  RNA 3'-5' helicase
     AVL56_18120
DNA repair and recombination proteins [BR:aaw03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    AVL56_18120
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2 EIF4E-T
Other DBs
NCBI-ProteinID: AMJ96038
LinkDB
Position
complement(4250763..4253246)
AA seq 827 aa
MSKTKAPLNKAIKTGSDILPPAFSQWFKNKGWALRDYQRQMLEQDSHNTTLLIAPTGAGK
TLSGFLPSLVELAQSPQLGLHTLYISPLKALTQDIHRNLLQPIEEMELPITAETRTGDTP
SHKRQRQRKKPPNLLLTTPESLMLMLSYADADKLFGKLKRVIIDETHSLVANKRGDFLSL
ALARLSVLSHKMKRVGLSATVAYPETLGAWLAGTEGVANIISVKAGEKPKVEMLQSENRM
PFGGFMARYAITDIYKAIEDAKTTLVFVNTRAQSELIFQMLWEHNTAALPIALYHGSLSK
EQRRKTEAMMSSGLLRAVVCTSALELGIDWGDVDKVIQVGAPKGVSRLLQRIGRANHRLD
EPSEALLVPANRFEALECQAAIDAINKGELDGDAPQPGALDIIPQFIVNCLCSNADSPGT
LYEQILMASPYQGLDKQDFEKLWQFALDGGSALNAYERYQRLMQNDDGTFSPANRRVIQR
HRQNIGTIVEAGRLKVKRIRRGNQGKIIGEVEEYFAQQLTPGDTFYFAGEVLKYEAIRDM
QLHARPAKAKEPKIPSYSGGQMPLSTYLADGVRAILASPKNWRNLPAQVREWLSLQQQFS
QLPEPEKVLVEQFPFRNVNHTLYYTFEGRKANQTLGMLVTRRMEKMGIKPLSFSVTDYGL
SISAVNKVTEIQLQQLFQPDILGDELEDWMLQAPMLKRSFRQVAVVSGLTEQRYHASKKT
MKQVTFSTDLIYDTLREHDPDHILLAVARADAERELLDLQRLANLLIRFVDKTTLVNLEK
VSPMAIPIVLNMRSEQIKGAGAQAIIEQADLYAEAENMLDEVRALLS
NT seq 2484 nt   +upstreamnt  +downstreamnt
atgtctaagaccaaagcaccacttaacaaagcaattaaaaccggtagtgacattttgcca
ccggcgtttagccagtggtttaaaaataaaggctgggcgcttcgagattatcaaaggcaa
atgctagagcaagactcccataacactactttgctcattgcccccaccggcgctggaaag
actctatcgggttttctgcctagcttagtcgagttagctcaatcgccacagctaggcttg
cacaccttatacatttccccgcttaaagcgttaacccaagatattcatcgtaacttattg
caacctatcgaagaaatggaattgccgataacagcagaaactcgcactggcgatacacct
tcgcataaacggcagcgccaacggaaaaaaccgcccaatctgctacttaccaccccagaa
tctttaatgttgatgctgagctatgccgatgctgacaaactatttggcaaacttaagcga
gtcattattgatgaaacccatagcttggtggcaaacaaacggggagacttcctgtcttta
gcgctagcgcggctttcagtattgtcacataaaatgaaacgggtaggcttgtcggccacg
gtagcttacccagaaacgctaggtgcttggcttgctggcacagaaggcgttgctaatatc
atcagcgtgaaagcgggtgaaaaacccaaagtagagatgctgcaatctgaaaaccgcatg
cccttcggtggttttatggcgcgttatgccatcaccgatatctacaaggccattgaagac
gcaaaaacgaccttggtgttcgttaatactcgggcgcaatctgaactgatttttcaaatg
ctgtgggaacacaataccgctgccttacctatagccttataccacggaagcttgagtaaa
gagcagcggcgcaaaacagaagccatgatgtctagcggcttgttacgggcagtagtatgt
acttcggcgcttgagctaggtattgattggggcgatgtagataaggtcattcaggtaggt
gcgcccaaaggtgttagccggttgctgcaacgtattggccgagcaaaccatcggttagat
gaacccagtgaagcgttgcttgtaccagctaaccgatttgaagcgctggaatgccaagcg
gctattgatgcaattaataagggcgagctagatggcgatgccccgcagccgggggcattg
gatatcatcccccagtttattgtgaattgcctatgcagcaatgctgacagcccaggcacc
ctttacgagcaaatactcatggcctcgccctatcaagggctagataaacaagattttgaa
aaattatggcagtttgcgttagatggcgggagtgcgcttaacgcatacgagcgatatcag
cgcctaatgcaaaacgatgatggcactttttcaccggccaataggcgggtgattcaacgt
catcgtcagaacataggcacaattgttgaggcgggtagattaaaagtaaaacggattcgc
cgtggtaatcagggcaaaattattggtgaggtagaagagtactttgcccagcaacttacc
ccaggcgatacgttttattttgctggtgaagtgcttaagtacgaagccattcgggatatg
caattgcatgcacgccccgctaaagcaaaagagcctaaaattcccagttattccggtggt
caaatgccactgtcaacatacttggctgacggggttagagccatactagctagccccaag
aattggcgcaatttgcctgcacaagtacgagaatggctgagtttacagcagcagttttca
cagcttcctgagcctgaaaaagtgttggtggagcagtttccatttcgtaacgtgaaccat
acgctgtattacactttcgaaggtaggaaagcgaaccaaactttgggcatgttagttacc
cgtagaatggaaaaaatggggattaagccgcttagctttagtgtgactgattatggtttg
tcgataagcgcggttaataaagtaaccgaaattcaactacagcagttatttcagccagat
atattaggcgatgagctagaggactggatgttgcaagcccctatgttaaaacgctccttt
aggcaggtggcagtagtaagcggtttaactgaacagcgttatcatgcaagtaagaaaacc
atgaagcaggtaacgttttcaactgatttaatttacgacacgctgcgtgagcacgacccc
gatcatattcttttagcggtcgcgcgggctgatgctgaacgggagttgttagatttacag
cgcttagcgaatttgcttattcgttttgtagataaaaccacgttagttaacttagaaaaa
gtatcgcccatggccataccgattgtgctgaatatgcgcagtgaacaaataaaaggggca
ggtgctcaggcgatcatcgagcaagccgatttatatgccgaagcagaaaatatgctagac
gaagtacgagctttgttgtcctaa

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