KEGG   Haploplasma axanthum: NCTC10138_00643
Entry
NCTC10138_00643   CDS       T05950                                 
Symbol
polC_1
Name
(GenBank) DNA polymerase III polC-type
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
aaxa  Haploplasma axanthum
Pathway
aaxa03030  DNA replication
aaxa03430  Mismatch repair
aaxa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:aaxa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NCTC10138_00643 (polC_1)
   03430 Mismatch repair
    NCTC10138_00643 (polC_1)
   03440 Homologous recombination
    NCTC10138_00643 (polC_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aaxa03032]
    NCTC10138_00643 (polC_1)
   03400 DNA repair and recombination proteins [BR:aaxa03400]
    NCTC10138_00643 (polC_1)
Enzymes [BR:aaxa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     NCTC10138_00643 (polC_1)
DNA replication proteins [BR:aaxa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     NCTC10138_00643 (polC_1)
DNA repair and recombination proteins [BR:aaxa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     NCTC10138_00643 (polC_1)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger HHH_6 RNase_H_2 DNA_pol3_a_NI DEDDh_C HHH_3 tRNA_anti-codon DUF2536 Zn_ribbon_8
Other DBs
NCBI-ProteinID: VEU80275
UniProt: A0A449BCX0
LinkDB
Position
1:648587..653035
AA seq 1482 aa
MNKYDLFLKQKNYDNEIIKNSKLKIVDVYPKKDEWVFFIEFNDFIDADLLFSFSKTVKEY
FNNAAVKKIDIKVVHNNKNNFSKYALNYWDSSIHYLCNIKPSFSALENYNVTYEENKFLV
HIDKDSVWVKEYFNEIYNVFRDIKIESKIECFIDENLSTIKQKIDERIETRTERLNENNY
VPSKREVKETKVLNRNQKAQKVRINTIPMDQFGIDKYKNQNGNTRFVIEGEIVEVEVKEL
RTIKLLEMTIADQNDAITIKNFINNDRDFEFGKSLKAGMFVEVEGEAQFDTYVHEVVIMG
RKISIIEGIEKQNRLDKSKEKRVELHLHTKMSDMDGVTEVKDYVDRALEWGHEAIAFTDH
NGVYAFPDILKATKGKPIKPIYGVELDMVDTEKFVVVSNGEESRNLLEETYIVFDLETTG
LSTTNDLIIEIGAVKVKNTEIIDRYQTFVNPNMLLSEFTKGLTNITDEDVVNARQIEDVL
PEFISFIEDGILVAHNAAFDIKFITEKAMRMGLKIDNTYIDTLNLARYFYNKDLKRFNLK
ALSRFFKVELENHHRADQDAEATSKVWIQMLYNLRDWGIKTTTDLYNSIDKNESYKHLIP
SHITALAKNQTGYKNIFKIVSKALTKNFYNGPRTIKEELNDLREGVLIGSACDFGDVFEA
ALNGRDIELDKAISFYDYIEVQPPSSYMHLMENNSNDGKVIIEATITKIIKSAKRQNKIV
VATGNVHYLDDEDELYRKIYVRTPVVGGGLHPLHGAEKLPKQYFKTTNEMLEEFSFLDLD
LAKEIVITNTNLINKQIESIKAFPDELYSLPDDAFTGIGVESIEKETKRLVYETAHKQYG
EKLHPIVEARIEKELDSIIGNKFAPIYYISHLLVKKSLDDGYLVGSRGSVGSSFVATLMS
ITEVNPLKPHYRCKNGDFTVFNLTKEELFTYGISEKEKEFQKYFENVQSGFDLPDQVCPI
CGEKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDYQSKAHSYVRELLGEDYSFRAGTIG
TVADKTAYGYVLGYLEDNNIMLRKAQIKRLADKIKGVKRSTGQHPGGIVVVPKNKEIFDV
TPIQYPANDTSSDWYTTHFDYHSFESNLLKLDILGHDDPTMIKFLMDYVKEHQDDFPFSD
ARDIPLDDKEVLRMFQETKILGLKTDDIMSEVASFGIPEFGTPFTREMLNDTKPNSFAGL
VKISGLSHGTDVWLKNAKDLIAGTTEYEKISFDDIIACRDDIMVQLSDMGLEPLKAFEIM
EFVRKGKPSKDTKKWNTYVEEMEKHDVPKWYIWSASQIKYMFPKAHATAYVIMAIRIAWF
KFYKPLLFYSAFFSKRAVQFDYEAMVSGANAIRNRINQLEQIPMYQRKVKDNDLLVTLGV
ALEMTRRGFRFLPVDIDKSEATTFVIEEKGIRMPFVSVDGLGEQVAYGIVEARNEKPFNS
VSDVHKRTKINKTVQVLLKDYGAYGELNTENDVIDIGLFAEI
NT seq 4449 nt   +upstreamnt  +downstreamnt
atgaataagtatgatttatttttgaaacaaaaaaattatgataacgaaataataaaaaac
tcaaaattaaagatagttgatgtatatccaaaaaaagatgagtgggtttttttcatagaa
tttaatgattttattgatgcagatttgttattttcttttagtaaaacagttaaagaatat
tttaataatgcagcagtcaaaaaaattgatattaaagtagttcataataacaaaaataat
ttctctaaatatgcattaaattattgggatagttcaattcattatttatgtaatattaaa
ccatctttttctgcattagaaaattataacgttacttatgaagaaaataagtttttagta
catattgataaagatagtgtttgggttaaagaatattttaatgaaatatataatgttttt
agagatattaaaattgaatcaaaaatcgaatgttttattgatgaaaacttatcaacaatt
aaacaaaagattgatgaaagaattgaaacaagaactgaaagactaaatgaaaataattat
gttccttcaaagagggaagtaaaagaaacgaaagttttaaaccgaaatcaaaaagctcaa
aaagttagaataaatacaattccaatggatcagtttggaattgataaatataaaaatcaa
aatggaaatacaagatttgttattgagggagaaattgttgaagttgaagttaaagaatta
agaacaattaagcttttagaaatgacaattgctgatcaaaatgatgcaataacaataaaa
aactttattaataatgatcgtgattttgaatttggtaaatccttaaaggccggaatgttt
gtagaggttgaaggagaggcacaatttgatacttatgttcacgaagtggtaataatgggg
cgaaagatttctattattgaaggaattgaaaaacaaaatagacttgataaatcaaaagaa
aaaagagtggaattacatcttcatacaaaaatgtcagatatggatggtgtaacggaagtt
aaagattatgttgatagagcacttgaatggggacatgaagcaatcgcatttactgaccat
aatggtgtttatgctttcccagatattttaaaagctacgaaagggaaaccaattaaacca
atctatggtgttgaattagatatggttgatactgaaaaatttgttgttgtttcaaatggt
gaagaatcaagaaatcttttggaagaaacatatatcgtttttgacttggaaacaacaggt
ctatcaacaaccaatgatttaattattgaaataggagcagtaaaagttaaaaacacagaa
attattgataggtatcaaacatttgttaatccaaatatgttgttatcagaatttactaaa
ggattaactaatataactgatgaagatgttgttaatgcacgtcaaattgaggatgtttta
ccggagtttattagttttattgaagatggaattttagttgctcataatgctgcatttgat
attaagtttattacagaaaaagcaatgagaatgggattaaagattgataatacatatatt
gatacattgaaccttgctagatatttttataataaagatttaaagagatttaatttaaaa
gcattatctagattttttaaagtagaacttgaaaatcaccatagagctgatcaagatgct
gaggcgacaagcaaagtttggattcaaatgctatataatcttcgtgattggggaattaaa
acaactaccgatttgtataattcaatagataaaaatgaatcatataaacatctaatacct
tcacacattaccgcacttgctaaaaatcaaacgggatataaaaatatatttaagattgta
agtaaggcattaacaaagaatttctataatggaccaagaacaattaaagaagaacttaat
gatttaagagaaggtgttttaattgggagtgcttgtgactttggagatgtttttgaagct
gcattaaacggaagagatattgaattagataaagcaattagtttttatgactacattgaa
gtacaaccaccaagttcatatatgcatctaatggaaaataatagcaatgatggtaaagta
attattgaagctacaattacaaaaataattaaatctgctaaaagacagaataaaattgtt
gtagcaacaggaaatgttcattacttggatgatgaagatgaattgtatcgtaagatttat
gttagaactccggttgtgggtggcggcttacatcctttgcatggagctgaaaaattacct
aaacaatattttaaaacaacaaatgaaatgcttgaagagtttagttttttagatttggat
ttagcaaaagaaattgttataactaatacaaatttaataaataaacaaattgaaagtatt
aaagctttcccagacgaattatattcattgccagatgatgcatttactggtattggagtt
gaaagtattgagaaagaaacaaaacgacttgtttatgaaacagctcataagcagtatggt
gaaaaacttcacccaattgttgaagcgagaattgaaaaagaattagatagtattattggg
aataaatttgccccaatttattacatatcacatttacttgttaaaaaatcactagatgat
ggatatctagtaggttctcgtggatctgttggttcaagttttgtagctacattaatgagt
attactgaggtaaatccattgaaacctcactatcgttgtaaaaatggtgatttcacagtt
ttcaatttaacaaaagaagaattatttacatacggaataagtgagaaagaaaaagagttt
caaaaatattttgaaaatgttcaatcaggatttgatttacctgatcaagtttgtccaatt
tgtggtgagaaacttattaaagatggtcatgatattccgtttgaaactttcctaggattt
aaaggagataaagttccagatattgatttaaacttctcaggagattatcaatctaaagct
cactcatatgttagggagttattaggtgaggattattcatttagagctggaactattgga
acagttgctgataaaacagcatatggttatgttttaggttatttagaagacaataatatt
atgcttagaaaagcacaaataaaaagattagctgataaaattaaaggtgtaaaaagatcg
actggacaacacccaggtgggattgttgttgttccgaaaaataaagagatttttgatgtt
acaccaattcaatatccagctaatgatacatcaagcgactggtatacaacacattttgat
tatcactcatttgagtctaatttactgaagttggatatattagggcacgatgatccaaca
atgattaagttcttaatggattatgttaaagaacatcaagatgattttccttttagcgat
gcaagagatataccattagatgataaagaagttttaagaatgttccaagaaacaaaaata
ttaggtcttaaaaccgatgatattatgagtgaagttgcttcattcggtattccagagttt
ggaacaccatttacacgcgaaatgttaaatgatactaaacctaatagttttgcagggcta
gtaaaaatatctggtttatcccatggaactgatgtttggcttaaaaatgctaaagattta
attgctgggacaaccgaatatgaaaaaatatcttttgatgatattattgcttgtcgtgat
gatattatggttcaattaagtgatatgggattagaacctttaaaagcatttgaaattatg
gagtttgttagaaaagggaaaccaagtaaagatactaaaaaatggaatacttatgtcgaa
gaaatggaaaagcatgatgttccaaaatggtatatttggtctgcaagtcagattaagtat
atgtttcctaaagcacatgctactgcctatgtaattatggcgattagaattgcatggttt
aagttttataaaccacttctgttctatagtgcatttttctctaaacgtgctgtacagttt
gattatgaagcaatggtttcaggagctaacgcgattagaaatcgaattaatcaattagaa
caaataccaatgtatcaaagaaaagttaaagataatgatttattagtaacattaggagtt
gcactggaaatgactagaagaggatttagattcttacctgttgatattgataaatcggaa
gcaacaacgtttgttattgaggaaaaaggaattagaatgccgtttgtttctgtagatgga
cttggcgaacaagttgcttatggaattgtagaagcaagaaacgaaaaacctttcaactca
gtttctgatgttcataagcgaacaaagatcaataaaactgttcaagtgttattaaaagat
tacggcgcttatggagaattaaatacggaaaatgatgtgattgatataggattatttgca
gaaatttaa

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