Croceibacterium atlanticum: WYH_00531
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Entry
WYH_00531 CDS
T03925
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aay
Croceibacterium atlanticum
Pathway
aay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WYH_00531 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aay03019
]
WYH_00531 (rnr)
03016 Transfer RNA biogenesis [BR:
aay03016
]
WYH_00531 (rnr)
Enzymes [BR:
aay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
WYH_00531 (rnr)
Messenger RNA biogenesis [BR:
aay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WYH_00531 (rnr)
Transfer RNA biogenesis [BR:
aay03016
]
Prokaryotic type
tRNA degradation factors
WYH_00531 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
AKH41590
UniProt:
A0A0F7KS57
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All DBs
Position
545993..548266
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AA seq
757 aa
AA seq
DB search
MAKRPTPGLPSRKQVLEFIQTSETPAGKREIARHFGLKGQEKIALKALLKDMAEEGLIDG
RRTAYHRMGGVPKVTVLRVVDIEDGEAIAIPDNWQPDDATPPPRLRLKESKKGGALRSGD
RVLARTEETGSGWRAFPMKKLPSRSDSLLGVVEMDGGGKPWLAPVDKRIRNSSPIADLGG
AEEGNLVLAEPAGRSPRSGVKVTEVLGDPLAPKSYSLIAIHKHGIPHIFPEEVLKEGEEA
ARLPLSEEKREDLRHLPIVAIDPADARDHDDAIWAEPDGEGGFRALVAIADVSFYVRPGG
ALDREARKRGNSVYFPDRVVPMLPEVLSTDVCSLREGETRAAMACHLSISAEGKVTSWRF
TRALVNIAETIAYEDAQERIDNGTASEPLQNLWGAWKLLASARDARDPLELDLPERRVLL
DEKGRITEIAVRERLDAHRVVEDFMIAANVAAAKALESKASPVVYRVHEPPTREKLIALR
EYFDSIGKNLALGQVITPGLFNRMIKDISDPGEKALVMEAVLRSQTQAYYGPSNAGHFGL
ALGSYAHFTSPIRRYADLLVHRALVDAFGLEQPKPKGAIPDGTGLSDKDRADLSKVTDAI
SQSERRAMEAERDTIDRYVAAWLAGRVGETFRCRITGVQKFGFFATIAGLGGDGLVPVSA
LGREYFSYDEGARALVGEHSGTIYTVGDMLDLKLAESNPLTGALKFEPLDADGQAIEPRG
KRPPPKRKSKPKTQGKYAEGKRGRPANIRHQGRKRKK
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggctaaacgaccgacacccggcttgccctcacgcaagcaggtacttgaattcatccag
acgtccgaaaccccggccggaaagcgtgagattgcgcgtcatttcgggctgaaggggcaa
gagaagatcgccctcaaggccctgttgaaggacatggccgaggaagggctgatcgacggc
aggcgaaccgcctatcaccgcatgggcggtgtgcccaaggtcaccgtcttgcgcgtggtc
gatatcgaagatggcgaggcgattgccattcccgacaactggcagcccgatgatgccacg
ccgccgccccggctgaggttgaaggaaagcaagaagggcggggcgctgcgttccggcgac
cgcgtgctcgcccggacggaagaaaccggcagcggatggcgcgccttcccgatgaagaag
ctgccttcgcgcagcgattccctgttgggcgtggtggaaatggatggcggcggcaaaccg
tggctggccccggtggacaagcgaatccgcaattcctcccccattgccgaccttggcgga
gcggaagagggcaatctcgtcctcgccgaaccggccggacgatccccgcgctcgggcgtg
aaagtcactgaagtcctgggcgatccgctcgcgccgaagagctacagcctgatcgcgatc
cacaagcacggcattccacatattttcccggaagaagtgctgaaagaaggcgaagaggcc
gctcgcctgccgctgagcgaggagaagcgggaagatctgcgccacctgcccatcgtcgcc
atcgaccccgccgatgcccgcgatcatgacgatgcgatctgggctgaaccggacggggag
ggcggtttccgcgccctggtggcgattgccgatgtcagcttctatgtccgccccggcggc
gcactggatcgggaagccaggaaacgcggcaattccgtctatttcccggaccgcgtggtg
cccatgctgcccgaggtgctgagcaccgatgtctgttccttgcgcgaaggggaaacccgc
gcggcgatggcgtgccatctttccatcagcgcggaaggcaaggtgacgtcatggcgcttc
acccgcgcgctggtgaatattgccgaaaccattgcctatgaggatgcgcaggaacggatc
gacaatggcacagcctccgaaccgctgcagaatctgtggggtgcgtggaagctcctcgcc
tctgcccgcgacgcccgcgatccgctggaactggatctgccggaacgccgcgtcctgctg
gatgaaaaggggcgcatcaccgaaatcgccgtgagagaacggctcgatgcgcatcgcgtg
gtggaagatttcatgatcgcggccaatgtcgcggcggccaaggcgctggagagcaaggcc
tcgccggtcgtctatcgcgtgcatgagccgccgacccgtgaaaagctcatcgcgctgcgg
gaatatttcgactcgatcggcaagaatcttgccctggggcaggtcatcacgcccggcctg
ttcaaccgcatgatcaaggatatttccgatcccggcgaaaaggcgctggtgatggaggcg
gtccttcgcagccagacgcaggcctattacggccccagcaatgcggggcatttcgggctt
gctcttggcagttatgcgcatttcacttcgccgatccggcgttatgccgatctgctcgtg
catcgtgcgctggttgatgcattcgggctggaacagccaaagccgaagggggcaattccc
gacggcaccggcttgtcggataaggatcgggccgatctttccaaggtcaccgacgcgatc
agccagagtgaacgccgcgcgatggaggcggagcgggacacgatcgatcgctatgtcgcc
gcatggctggcgggccgggtgggcgagacattccggtgccgcatcaccggggtccagaaa
ttcggctttttcgccacgattgccggtctcggcggggatgggctggtgcccgtatcggcg
ctggggcgcgaatatttcagctatgacgaaggcgcgcgtgccctcgtcggagagcatagc
ggcacaatctacacggtcggcgacatgctcgatctcaagctggccgaatcgaatccgctc
accggcgcgctgaaattcgaaccgctggacgctgatggccaggctatcgaaccgcgtgga
aagcgcccgccgcccaagcggaaatccaagcccaagacccaaggtaaatatgccgagggc
aagcgcggccggccggccaatatccgccaccaggggcgcaagaggaagaaatag
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