Croceibacterium atlanticum: WYH_00645
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Entry
WYH_00645 CDS
T03925
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aay
Croceibacterium atlanticum
Pathway
aay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WYH_00645 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aay03019
]
WYH_00645 (rne)
03009 Ribosome biogenesis [BR:
aay03009
]
WYH_00645 (rne)
Enzymes [BR:
aay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WYH_00645 (rne)
Messenger RNA biogenesis [BR:
aay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WYH_00645 (rne)
Ribosome biogenesis [BR:
aay03009
]
Prokaryotic type
rRNA processing factors
WYH_00645 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AKH41701
UniProt:
A0A0F7KRG1
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All DBs
Position
665801..668542
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AA seq
913 aa
AA seq
DB search
MATRMLIDARHPEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPQEDREALLAEEQAHAEEEAALRAAEEEDEGAEGFDESD
DEDGDDDAGVEEIDTSEKDDVATIEDGLVDNGEDENSDEDGDDNQSSGEDQSRGRRGRRG
RGNRQGRGGERARAKEMDELRAKRQALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALT
TYLSLAGRYCVLMPNSSHGGGISRKISSAGDRKRLKQIVNELSLPRSMGLIVRTAGLQRT
KTEIKRDFDYLARLWDEIREGTLSSSAPAMIHSDSDLIKRAIRDIYNREIEEVIVEGAEG
YKAAKQFMKLLMPSHARRVKAYSDPVPLFQRFGAEDQLSAMYEPVVQLKSGGYLVINPTE
ALVSIDINSGRSTKEHGIEQTALHTNLEAAKEISRQLRLRDMAGLVVIDFIDMENNSNVR
KVERAMKDALKHDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRECPHCDGTGLVRTAS
SAGLSALRLIEDEAAKGKGTTITLYASTEAAIYLLNAKRADLAEIEHRYGVTVEVVPEGE
DEGAKMRVTSSGPRPTDTPKFEPIVDEDEDEDDMSESSEDNDEDQDGEPRKKRRRRRRGG
RGRNKQRGEDSQQDDGSDSSSDDSEEDDQSADTDRDAEAKDDDEGEAPRKRRRRGGRRRR
RRDEGEEVSEETAGEEDSSETSQSDEAEPEVPATTEAVSEAPTEAPAEAEAPSEEEAPKP
KRTRRKKKAEEAPAAAPAAEVKSEEAVEEAEAEEKPKPKPRTRRKKAVEPAAETETAKPD
SEEAEAKPAKPKRTRRKKVEAPVEEATGNAPEAAPAQNAEAEAEAPAPEGASTEESASSE
PPRRGWWQRTFGQ
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgttgatcgatgcgcgccacccggaagaaacgcgggtggcggtgctc
aagggaaacaggattgaggagttcgactttgaatctgccgaacacaagcagatcaaaggc
aatatatatctcgccaaggttactcgtgtagaaccctcgctgcaggcggccttcgtcgat
ttcggcggcaaccggcacggttttctcgctttcagcgaaattcatcccgactattatcag
atcccccaggaagaccgagaggctctgctggctgaggaacaggcccatgcggaagaagaa
gccgcattgcgagccgctgaggaagaggatgaaggcgccgaaggcttcgatgaatccgat
gacgaggatggcgacgacgatgccggggtcgaggaaatcgacaccagcgaaaaagacgac
gtagccacgatcgaggatggccttgtcgacaatggcgaggacgagaattccgacgaggac
ggtgatgacaaccagtcttccggcgaagaccagtcacgcggccgccgggggcgccggggc
cgtggaaaccgccagggtcgcggcggtgaacgcgcgcgcgccaaggaaatggacgagctg
cgcgccaagcgtcaggctcttcgccgtcgctacaagatccaggatgtcatccagcgccgt
caggtgctgctggtgcaggtcgtcaaggaagagcgtggcaacaagggtgctgcccttacc
acctatctgagcctggccggccgttattgcgtcctgatgccgaattcgagccatggcggc
ggcatcagccgcaagatcagctccgccggtgatcgcaagcgcctgaagcagatcgtcaac
gaactaagcctgccgcgctccatgggcctgatcgtccgcaccgccgggcttcagcgcacc
aagacagagatcaagcgcgatttcgactatctcgcccggttgtgggacgagatacgcgaa
ggcaccctgtcgtccagtgcgccagccatgatccattccgattcggacctgatcaagcgc
gccattcgcgacatatataatcgcgaaatcgaagaagtgatcgtcgaaggcgcagaaggc
tacaaggcggccaagcagttcatgaagctgctgatgcccagccatgcacggcgcgtgaaa
gcctattccgatccggtgccattgttccagcgtttcggcgcggaggaccagctttcggcc
atgtacgaacctgtcgtgcagctgaaatcgggcggttatctggtgatcaacccgacggaa
gcgctggtttccatcgacatcaactccggccgttcgaccaaggaacacggaatcgaacag
accgcgctgcacaccaatctggaagcagcgaaggagatctcgcgccagctgcggctgcgc
gacatggccgggctggtcgtgatcgacttcatcgacatggagaacaattccaacgtccgg
aaagtcgagcgcgcgatgaaggacgcgctgaagcacgaccgcgcccggatccaggttggc
aggatttccggtttcggcctgatggaaatgagccgccagcgcctgcgcaccggcgtgctg
gaagccacgacgcgcgaatgtccgcattgcgatggcaccggcctcgtccgcaccgcctcc
agcgccgggctttcagcgctgcgcctgatcgaggatgaagctgccaagggcaagggaacc
acgatcaccctgtatgcttcgaccgaagcggctatttatctgctgaatgccaagcgtgcc
gaccttgccgagatcgagcatcgctatggcgtgacggtggaagtcgtgcctgaaggtgag
gatgaaggcgcgaagatgcgcgttaccagttccggcccgcgtccgaccgatacccctaaa
ttcgagccgatcgtcgatgaggacgaggatgaggacgatatgtccgaaagctcggaggat
aatgacgaggatcaggacggcgagccgcgcaagaagcgccggcgccggcgccgtggaggc
cgtggccgtaacaagcagcgcggcgaagattcgcagcaggatgatggttccgattcctcc
tcggatgatagcgaggaagacgatcagtctgcggatacggacagggacgctgaagcgaag
gacgatgacgaaggggaagctccccgcaagcgtcgccgccgtggtggtcgccgcaggcgc
cgtcgggatgagggcgaggaagtaagcgaggaaactgccggcgaagaggattcgagcgaa
acctcccagtcggacgaggcggagccggaagttcccgcgactaccgaggccgtaagcgaa
gcgccgaccgaagccccggccgaggctgaagcgccgagcgaggaagaagctccgaagccc
aagcgcacacgtcgcaagaagaaggctgaggaggctcccgccgccgcccccgccgctgaa
gtgaagagcgaagaagcggtggaagaagccgaagcggaagaaaagcccaagcccaagccg
cgcacgcgccgcaagaaggccgtggaaccggcagccgaaaccgaaaccgccaaaccggat
tcggaagaggcggaagccaagcccgccaagccgaagcgcacgcgccggaaaaaggtcgaa
gcccctgtggaggaagccaccggcaatgctccggaagctgctcctgcgcagaacgccgaa
gccgaggctgaagcacctgccccggaaggcgcctccaccgaagagagcgcatcttccgaa
ccgccgcggcgcggatggtggcagcggactttcggccagtaa
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