Candidatus Koribacter versatilis: Acid345_1273
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Entry
Acid345_1273 CDS
T00352
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aba
Candidatus Koribacter versatilis
Brite
KEGG Orthology (KO) [BR:
aba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aba03016
]
Acid345_1273
Enzymes [BR:
aba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Acid345_1273
Transfer RNA biogenesis [BR:
aba03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Acid345_1273
Prokaryotic type
tRNA splicing ligases
Acid345_1273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ABF40275
UniProt:
Q1IS75
LinkDB
All DBs
Position
complement(1546887..1548116)
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AA seq
409 aa
AA seq
DB search
MTDSTYNVFAPASGVPIKAWTKGVPVEDQAKQQLMNVAQMPFVFKWVAAMPDVHWGIGAT
IGSVIPTKGAIIPAAVGVDIGCGMMAVQTSLHANQLPENLHAIREAIELAVPHGRTNNGR
AGDRGAWSDIPERNLNTWGELKPRYDAILAKHPKLDRGNHANHLGTLGTGNHFIEVCLDE
SDNVWFMLHSGSRGVGNRMGSYFIELARKDMERFFITLPDRDLAYFPEHTEHFHEYVEAV
EWAQDFARWNRHLMMQQIVDAVRRSGQVPEFTAEVQAINCHHNYVARENHFGENILVTRK
GAVRARLGDMGIIPGSMGARSFIVRGKGNVESFHSCSHGAGRAMSRNEAKKRFTVEDHVR
MTAGVECRKDADVIDETPAAYKPIDDVMAAQSDLVEIVYTLHQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgactgacagcacttacaacgtctttgccccggcgagcggggttccgatcaaggcctgg
accaagggtgtgcccgtggaagatcaggcaaagcagcaactgatgaacgttgcgcagatg
cccttcgtcttcaagtgggtcgccgccatgcctgacgtgcactggggaatcggagcgacc
atcggcagcgtgatccctaccaagggcgcgatcatccccgctgcggttggcgtggatatc
ggctgcggcatgatggcggttcagaccagcttgcacgcgaaccagttgccggaaaacctg
cacgcgattcgcgaagcgatagagttggctgtcccgcacggacgcaccaacaacggccgc
gctggcgaccgcggagcgtggagtgatattcccgagcgcaacctcaacacttggggcgag
ttgaagccgcgttatgacgcaatcctcgccaagcatccgaagttggaccgcggcaaccac
gcgaaccatctcggtacgctcggcacgggaaaccacttcatcgaggtgtgcctcgatgaa
tcggacaacgtctggttcatgctgcacagcggatcgcgcggcgtcggcaaccgcatggga
agttacttcattgaacttgcccgcaaggacatggagcgcttcttcatcactttgccggac
cgcgacctcgcgtactttccggagcacaccgagcacttccacgaatacgtggaagcggtc
gagtgggcacaggatttcgcgcgctggaaccgtcacttgatgatgcagcagattgtggat
gcagtccggcgttcggggcaggtgccggagtttaccgctgaagtacaggcgatcaactgc
caccacaactacgtggcccgcgagaaccacttcggcgaaaacattctcgtgacccgaaag
ggcgcggtacgtgcgcgcctcggcgatatgggaatcattcccggcagtatgggagcacgc
tcgttcattgttcgcggtaaaggcaacgtcgagagcttccatagctgcagccacggtgcg
ggacgcgcgatgtcacgcaacgaggcgaagaagcgcttcaccgtggaagaccacgtacgt
atgaccgctggtgtcgagtgtcgcaaggatgccgatgtgatcgacgagactccggctgcg
tataagcccattgacgacgtgatggcagcgcagtcggacttggtcgagatcgtctacacc
ttgcaccaggtggtctgcgtaaagggatga
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