KEGG   Candidatus Koribacter versatilis: Acid345_2893
Entry
Acid345_2893      CDS       T00352                                 
Name
(GenBank) DEAD/DEAH box helicase-like protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
aba  Candidatus Koribacter versatilis
Pathway
aba03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aba00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Acid345_2893
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aba03019]
    Acid345_2893
Enzymes [BR:aba01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Acid345_2893
Messenger RNA biogenesis [BR:aba03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Acid345_2893
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 AAA_25 Cas3-like_C_2
Other DBs
NCBI-ProteinID: ABF41894
UniProt: Q1IMK6
LinkDB
Position
3435352..3436623
AA seq 423 aa
MSPLRVARRQYVRSSHKRDPERRQRLTTFNDMPLSDVLKQRLEAAQFINPTPVQEKAIPP
ALDGRDILATAQTGTGKTLAFIIPALEMLRDTEPCGVQVLILVPTRELAMQVHGVYEQLK
GKKLKSAALVMGGTSERNQIQSIRSGARVVVATPGRLEDYMGRRLVDLSQVEMLVLDEAD
RMMDMGFLPAIKRILRALPRDKQTLCFSATMGPAVSGIVQDCLYNAVRVEIGSILKPAAA
VELHAIEVPIMGKKDALRQLLYEQEGKTLVFARTKRGTERLAKELIRDGFSAAMIHGDRS
QSQRNAALAAFDKGSIKVLVATDVAARGLDVDDIAHVINFDLPQVPEDFIHRVGRTGRAG
ATGMATSLVSGAEVFELRNIERTLKLKIARRDLNATTTPKREVKHRDTLSTRTLKRLPGE
IFA
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgtctccattgcgcgtcgcgagacggcaatacgtgaggtcctcacataaacgggacccc
gaaagaagacaacgattgactacctttaacgatatgcccctgtccgatgttcttaaacag
cgacttgaggcagcccagttcatcaacccaactccagtacaagagaaagccattccgccc
gcactcgacggccgcgatatcctcgccaccgcccagaccggtaccggtaagaccctggcc
ttcatcatccctgccctcgagatgctccgcgacaccgagccttgcggcgtgcaggtgctg
atactcgtacccactcgtgaactcgccatgcaggtgcacggcgtctatgagcagctcaag
ggtaagaaactcaagtccgcagcgctcgtcatgggcggcacctcggagcgcaaccagatc
caatcgatccgcagcggcgcgcgcgtagtggtagccacgcccggccgcctcgaggactac
atgggccgtcgcctcgtagacctcagccaggtcgaaatgctcgtcctcgacgaagccgat
cgcatgatggacatgggcttcctccctgccatcaagcgcatcctccgtgctcttccgcgc
gataagcagacgctttgcttctccgccaccatgggcccggcggtcagcggcatcgtgcag
gattgcctctacaacgcggtccgcgtggaaatcggttccatcctgaagccggccgccgcc
gtcgaattgcacgcgatcgaagttccgatcatgggcaagaaagatgccctgcgccagctt
ctctacgagcaggaaggcaagaccctggtcttcgcccgcaccaagcgcggtaccgaacgc
ttagccaaggaactcatccgcgacggcttctctgccgcgatgatccacggcgaccgcagc
cagtcgcaacgcaacgccgcattggccgcgttcgacaagggcagcatcaaggtcctggtc
gcgacggatgtagccgcccgcggtctcgacgtagatgacatcgcacacgtcatcaacttc
gacctcccgcaggtgccggaagacttcatccaccgcgtcggccgcaccggccgagccgga
gcaaccggtatggcgacgagcctggtatcaggcgccgaagtcttcgagctccgcaacatc
gagcgcaccctgaagctgaagatcgcacgccgcgacctgaacgccacaacgacgccaaag
cgtgaagtaaagcatcgcgacacgctctccacgcgcacgctaaagcggctccccggcgaa
atcttcgcctaa

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