Candidatus Koribacter versatilis: Acid345_3541
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Entry
Acid345_3541 CDS
T00352
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aba
Candidatus Koribacter versatilis
Pathway
aba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acid345_3541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aba03019
]
Acid345_3541
03400 DNA repair and recombination proteins [BR:
aba03400
]
Acid345_3541
Enzymes [BR:
aba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Acid345_3541
Messenger RNA biogenesis [BR:
aba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Acid345_3541
DNA repair and recombination proteins [BR:
aba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Acid345_3541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
B12-binding
SAM_GIDA_C
Motif
Other DBs
NCBI-ProteinID:
ABF42542
UniProt:
Q1IKQ8
LinkDB
All DBs
Position
complement(4187646..4189580)
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AA seq
644 aa
AA seq
DB search
MTDSLSADINSALKHYFGYDRFRPLQERIIRSIVANKDVCVIMPTGGGKSLCYQLPAAIS
QKTTVVISPLIALMNDQVVQLTQMGIPAALLNSSLPYDEQKKVMRAAREGKYRLLYLSPE
RLVREDTVGWLRTVPLGVFAIDEAHCISEWGHEFRPEYRQLKLLRNSFPDVPIAAFTASA
TQRVRHDIVHQLALREPDKYIASFHRPNLRYIIRQTDPYGQRDMLLRALRSYAGHNVIVY
APTIKMVEEVADFLIDKKIPAVPYHGQMDSALRTRNQEKWMTDEVRVLVGTIAFGLGINK
PAVRAVIHLAVPKSLENYYQEAGRAGRDGLPADCVMLWQPKDLGLLVYFIQQMQDTSEKK
RAWERYQVISEFVKSDECRHKQICEHFGEKKSFDDCVACDICGATVGWMTAPVPEPMPGD
PPIKLGLPEGKKPKKKLRAPQPSEIEHAMPLDDALLDFFRLWRRDEAKRRGVPAYVVMHD
TSLEHLCRVKPKTLEQVRSISGFGDLKTADYGPGILKALAEFDAGKRALQDLAPRLEPTG
PSPSHETLDLLRKGHSFAEIANIRGRQLQTVMAAVANLVETGDIEFDPKWVKEDRRLAIE
NACEKVGTARLKPVKDLVAAEVTLGEVHLVVAKKRWEEKRRDKE
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgattccctcagcgcagacatcaactcggccctcaagcactacttcggctacgac
cgcttccgcccgctgcaggaacggatcatccgcagcatcgtcgccaataaagacgtctgc
gtcattatgccgacgggcggcggaaagtcgctctgctaccagcttccggcggcgatctcg
caaaagactacggtcgtcatctccccgctcatcgcgcttatgaacgatcaggtcgtccaa
ctcacgcagatgggcattcccgccgcgttgttgaacagcagcttgccgtatgacgaacag
aagaaggtgatgcgcgccgcccgcgagggcaagtaccgcttgttgtatctctcgcccgag
cgcctggtgcgcgaagacactgtcggatggctgcgcaccgtgccgctcggcgtgtttgct
atcgacgaggcgcactgcatctccgagtggggacacgagtttcgacccgagtatcggcaa
ctcaagctactgcgcaacagttttcccgacgtccccatcgcggccttcaccgccagcgcc
acgcagcgcgtgcgtcacgacatcgtccatcaacttgcgctgcgcgagcccgacaaatac
atcgccagcttccatcgccccaacctgcgctacatcattcgccagaccgacccctacggc
cagcgcgacatgctgctccgcgcgctgcgcagctacgccggccacaacgtcatcgtctat
gcgccgacgatcaaaatggtggaagaggtcgccgactttctaatcgacaagaagatcccc
gccgtcccctaccacggacagatggattcggcgctgcgcaccaggaaccaggagaagtgg
atgaccgacgaggtgcgcgtgctcgtcggaaccattgcgttcggcttgggaatcaacaag
cctgcggtgcgcgcggtcattcacctggcagttccgaagtcgctggagaactattaccag
gaagcgggccgcgccggacgcgacggcctccccgccgattgcgtgatgctctggcagccc
aaagacctcggcttgctcgtgtacttcatccagcaaatgcaggacaccagcgagaagaag
cgagcctgggagcgctaccaggtcatcagcgaattcgtgaagtcggacgagtgccgccac
aagcagatctgcgaacacttcggcgagaaaaagagtttcgacgactgcgtggcatgcgac
atctgcggcgcaaccgtcggctggatgaccgctccggtccccgagcccatgcccggcgat
ccgccaatcaagctgggactgccggaagggaaaaagccgaagaagaaacttcgcgcgccg
caaccctcggaaatcgagcacgccatgccgctcgacgatgcgctgctcgacttcttccgc
ctgtggcgacgcgacgaagccaagcgccgcggtgttccggcctacgtggtcatgcacgat
acatcgcttgaacacctctgccgggtaaaaccgaagacgctggaacaagtgcgaagcatc
tccggcttcggcgacttaaagaccgccgattacggcccgggcatcctgaaagccctcgcc
gaattcgacgccggcaagcgcgccctccaggatttggctccgcgcctcgaaccgaccggc
cccagcccttcacacgaaacgctggacctcctccgcaaaggccattccttcgccgagatc
gccaacatccgcggccgccagttgcaaacggtcatggccgccgtagcgaacctagtcgag
accggcgatatcgagttcgatcccaagtgggtgaaagaagatcgtcggctcgcgattgaa
aacgcatgtgagaaagtcgggacggcgcggctgaaaccggtgaaggatttagtggcggcc
gaggtgacgctgggggaagtgcatttggtggtggctaagaagaggtgggaagagaagaga
agagacaaggagtag
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