Candidatus Koribacter versatilis: Acid345_3965
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Entry
Acid345_3965 CDS
T00352
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aba
Candidatus Koribacter versatilis
Pathway
aba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acid345_3965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aba03019
]
Acid345_3965
03016 Transfer RNA biogenesis [BR:
aba03016
]
Acid345_3965
Enzymes [BR:
aba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Acid345_3965
Messenger RNA biogenesis [BR:
aba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Acid345_3965
Transfer RNA biogenesis [BR:
aba03016
]
Prokaryotic type
tRNA degradation factors
Acid345_3965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_HELZ2
OB_RNR_1st
S1CSD-TOTE-2
DUF3097_C
Rho_RNA_bind
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ABF42965
UniProt:
Q1IJI5
LinkDB
All DBs
Position
complement(4690249..4692732)
Genome browser
AA seq
827 aa
AA seq
DB search
MLTDQQILDHIERQAHQSANFKQLVREMRLRGPDRDQLGRRLESLVKRGKLVTAAAGRYA
MVKTTRAQNLIAGKLSMHRDGYGFVMPGAAEVKSAIEGDIYIPPHAIGSAMHGDEVLAEI
VATKKDGRAEGRILRTLNRAHTSVVGTFHYDKVNFVRPIDEKITQDIVIPKGMEWPPDVE
REEGEKRKKRSEQDRVIGTEAKRREWTDLDNLVVNVEITEWPSPTQSPRGRVVEILGYED
DFGVDTEIMIRKHHLPHQFPAAVLSEARSFSPEIPAKEIKHRRDYRELPIVTIDGETARD
FDDAVLVSHLPNGNFELQVHIADVAHYVTDESDIDLEARLRGTSVYFPDRAVPMLPLELS
TDICSLRPQVERLVLSCVMEIDHQGEIVGYELNEGVIRSAERMTYTAVHGVLQGDTELRT
RYAPLVKNFELMRDLASILNKKRQKRGSIDFDLPEPVIEFDENGLMKGVTRSERNEAHRL
IEEFMLAANESVATYLEARKIASLYRIHEKPDPKRVYEFETLAASFGYSLGVGSLPIERV
HLKADKRARHGTGRRSEPIEIPKDVHITPRMYQKLTQKLEGKPEERILSYLMLRSLRQAR
YSEKNEGHFALAATSYTHFTSPIRRYPDLIVHRILKQVLKEQAEKNDHGVPVGVGGAVNE
VDGHSPWSKRDGHERKGKQQHEDRPPLTGPIPEEQLRQIAEESSDAERRADDAERELLEW
KKIKFMQDRVGEEFTGLIVSVTKYGLFVELTDLFVEGLVPLLTLQGDHFNYHENTKQLIG
ERSRKTYSLGDKVRVILDRIDRMQRKLQFAVVEDEPHRAEGKHKKSR
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgctcactgaccaacagatcctggaccacatagaacggcaggcgcaccagtctgcgaat
ttcaagcaattggtgcgtgaaatgcggctgcgcgggccagaccgcgaccaactggggcgt
cggctggaatcactggtgaagcgcggaaaactcgtaacggccgccgccgggcgctatgcc
atggtgaagacaacgcgggcgcagaacctgattgccggaaaactcagcatgcatcgcgat
gggtatgggttcgtgatgccgggcgcggccgaggtgaagagcgcgatcgagggcgacatc
tacattccgccgcacgcgattggctcggcaatgcatggcgatgaggtgctggccgagatc
gtggcgacgaagaaggacggtcgcgccgaggggcgtattctccgcacgctgaaccgggca
cacaccagcgtggtcggcacgttccactacgacaaggtcaatttcgtgcggccgatcgac
gagaagatcacccaggacatcgtgattccgaagggcatggagtggcctccggacgtggag
cgcgaggaaggtgagaagcgcaagaagcgctcggagcaagatcgcgtgattggcacggag
gcgaagcggcgggagtggacggacctcgacaacctcgtagtgaacgtggagatcacggag
tggccgtcgccgacgcagagcccgcgcgggcgggtggtggagatcctcgggtacgaggac
gatttcggtgtggataccgagatcatgatccgtaagcaccacctgccgcaccagtttccg
gcagcggtgctgagcgaggcgcgcagcttcagcccggagattccggcgaaggaaatcaag
catcggcgggattatcgtgagctgccgatcgtgaccatcgacggcgagaccgcgcgcgac
ttcgacgatgcggtgctggtgagccacctgccgaacgggaacttcgaactgcaggtgcac
attgcggacgtggcgcactacgtgaccgatgagtcagacattgaccttgaggcgcggctg
cgcgggacgtcggtgtactttccggaccgcgcggtgccgatgctgccgctggagctctcg
accgacatctgctcgctgcggccgcaggtggagcgactggtgctctcgtgcgtgatggag
atcgaccaccagggcgagatcgtgggctacgagttgaacgaaggcgtgatccgctcggct
gaacgtatgacgtacaccgccgtgcacggcgtgctgcaaggtgatacggagttgcgcacg
cgttatgcgccgctagtgaagaacttcgagttgatgcgcgacctggcgtcgatcctgaac
aagaaacgacaaaagcgcgggtcgatcgatttcgatttgccggagccggtgatcgagttc
gacgagaacgggctcatgaagggcgtgacccgttcggagcgcaacgaggcgcatcggctc
atcgaagagttcatgctggcagcgaacgagagcgtcgcgacgtatctcgaggcgcggaag
attgcttcgctgtatcgcatccacgagaagccggacccgaagcgcgtgtacgagtttgag
acgctggcggcgagcttcggatattcgctgggcgtgggttcgctaccgattgaacgcgta
cacctgaaggccgataagcgcgcgcggcatggaaccggcaggcgctcggagccaatcgag
ataccgaaggatgtgcacattacgccgcggatgtaccagaagctgacgcagaagctcgaa
ggcaagccggaagagcgcatcctgagctacctgatgctgcggtcgctgcgccaagcgcgc
tactcggagaagaacgaaggccacttcgcgctggcggctacgagctatacgcacttcacg
tcgcccatccgacggtatccggacttgatcgtgcaccgcatcctgaaacaagtgttgaag
gagcaagccgagaagaacgatcacggtgtgcccgtcggggttggcggtgcggtgaacgaa
gtcgacggacactcgccgtggagcaagcgcgacgggcacgagcgcaagggcaagcagcaa
cacgaagatcgtccgccgctcacggggccgattcccgaagaacagttacggcagattgcg
gaagagagcagcgatgccgagcgtcgcgccgacgacgccgagcgcgagctgctggagtgg
aagaagatcaagttcatgcaggaccgtgtcggcgaggagttcaccggcctgatcgtgagc
gtgaccaagtacgggctcttcgtggaactgacggatttgttcgtcgagggtctggtgccg
ctgcttacgctacagggcgaccatttcaactatcacgagaacaccaagcaactcattggg
gagcgcagccggaagacgtactcgctcggcgacaaggtgcgcgtgatcctcgaccgcatt
gatcgcatgcagcggaagttgcagtttgcggtggtggaagacgagccgcaccgggcggag
ggaaagcacaagaagtcgcgctga
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integrated database retrieval system
