Candidatus Koribacter versatilis: Acid345_4675
Help
Entry
Acid345_4675 CDS
T00352
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aba
Candidatus Koribacter versatilis
Pathway
aba03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aba00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Acid345_4675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aba03021
]
Acid345_4675
03400 DNA repair and recombination proteins [BR:
aba03400
]
Acid345_4675
Enzymes [BR:
aba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Acid345_4675
Transcription machinery [BR:
aba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Acid345_4675
DNA repair and recombination proteins [BR:
aba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Acid345_4675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ABF43675
UniProt:
Q1IHH5
LinkDB
All DBs
Position
complement(5530339..5534676)
Genome browser
AA seq
1445 aa
AA seq
DB search
MELSLLPGNVPASDPEDASSDDALHGSPHSSHRQEPAGKEDNLYRSSPFDLGSNITDFDA
IRISLASPEKIRSWSHGEVTKPETINYRTFKPERDGLFCARIFGPVTDWECLCGKYKRMK
HRGVICDKCGVEVTLSKVRRERLGHIELASPCSHVWFFKGLPSRIGHILDISLRDLESVL
YFEAYVVVEPGDAPVKEREVIKDETKFRELDQQYRPTGFKALMGAEAIKELLKRVDAESL
SVELREKMKNETSIQKRLKFAKRLKVAEAFRKSTNKPQWMILDVIPVIPPELRPLVPLDG
GRFATSDLNDLYRRVINRNNRLKKLMDLHAPEVIVRNEKRMLQEAVDALFDNGRRGRVLR
GANNRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELF
KPFIYHRLEQTGHCTTIKQAKELVEQQEPVVWDILEEVIKDHPVLLNRAPTLHRLGIQAF
EPVLVEGKAIKIHPLVCTAFNADFDGDQMAVHIPLSPEAQIEASVLMLASHNILSPASGQ
PITVPTQDMVLGMYYLTKARPGSKGEGRAFANIEEVLLAKEMGEVETLTPIRLRYTGDVM
DLTTAYDDQDVTHTEPVPFQRQYINTTVGRAILNDNLRRATAEMPYINGLLKKKGIGNLV
NYVYLRFGLEITVQMLDQIKSLGFQYATRSGLSIGIDDMVISPNKAKVVKEAEQTVNSVQ
QQYLDGAITNGERYNKVVEIWSAITEKVADEMFGNMQQMDKAGEINPIYVMADSGARGSK
QQIRQLSGMRGLMAKPSGEIIETPITANFREGLTVLEYFISTHGARKGLADTALKTADSG
YLTRRLVDVAQDVIISEYDCGTVDGIYVSSIVESGEIIEPLRDRVIGRVSLEKIKDYEGN
VVVDVNQEVTEDLANGIAAAGIERVKIRSVLTCESKRGVCALCYGRNLASGRLVELGEAV
GVIAAQSIGEPGTQLTMRTFHIGGTASRVSEQSRLDAKNNGTARFHNLTVVRAKEGHLVV
MNRNGAITVIDEKGREKERYAVVYGAKLRVEDGQQVKLGQVMVEWDPYTFAILTEIGGAV
GFKDLHEGLTLHEEVDEVTGLSRHVVMDSPDEKRQPAIVIKGAKGTKRYLMPSRAHLMVL
DGEEVFPGDVLAKIPRETTKTKDITGGLPRVVELFEARKPRETAVISEIDGTVKFGEVSK
GQRKIYVVADDGTEREYSVPRGVHVNVQEGERIQAGEQLMDGPLNPHDILAVLGEKQLQS
YLVNEIQEVYRLQGVNISDKHIETIVRQMMRWVKVEDVGDTNFLLEQQVDKFRFRAENEA
AIASGGRPATGRPLMLGITKASLSTDSFISAASFQETTRVLTEASINGAVDHLRGLKENV
IVGRLIPAGTGMEYYRNVALSPELEAQAQQVQEEVHQAYEEAERALELLRNEGEDETGNE
ELVAE
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
ttggaactttcccttcttccaggaaacgttccagcaagtgatccggaagacgccagcagc
gacgatgcgctgcacggatccccgcattcgagccacaggcaagaacccgcggggaaggag
gacaatttgtaccgttcgagccctttcgacctcggaagcaacatcacggatttcgacgca
atccgcatcagccttgcttcgccggaaaagatccggagctggtctcacggtgaggtaact
aaacccgaaaccatcaactaccgcacgttcaagcccgagcgtgatggcttgttctgcgcc
cgcatctttggcccggtcacggactgggaatgtttgtgcggcaagtacaagcgcatgaag
caccgcggcgttatttgcgacaagtgcggcgtggaagtcacgctcagcaaggtccgccgc
gaacggcttggccacatcgaactggcctcgccctgctcgcacgtgtggttcttcaaggga
ttgcccagccgcatcggccacatcctcgatatctcgcttcgcgacctcgagtcggtgttg
tatttcgaagcctatgtcgtggttgagcccggcgacgcgcccgtcaaagaacgcgaagtc
atcaaggacgaaaccaagttccgcgaactcgatcagcagtaccgtcccactggtttcaag
gccctcatgggcgccgaagccattaaggaattgctgaagcgcgtggacgccgaatcgctc
tcggtcgaactccgcgagaagatgaagaacgagacgtccatccagaagcggctcaagttc
gccaagcgcctcaaggttgctgaagcgttccgcaagagcaccaacaagccgcagtggatg
attctcgacgtgatcccggtcattccgccggagttgcgtcctctcgttccactcgacggc
ggccgtttcgccacctccgatctcaacgacctctatcgtcgtgtgatcaaccgtaacaac
cgcttgaagaagctcatggacctgcatgcgcccgaagtcatcgtgcgcaacgaaaagcgt
atgttgcaggaagccgttgacgctctcttcgacaacggacgtcgtggccgcgtactccgc
ggtgccaacaaccgtccgctgaaatcgctctccgacacgctcaaaggcaagcagggccgc
ttccgtcagaacctgctcggcaagcgcgtggactactcgggacgttcggtcatcgtggtt
ggtccggagctcaaactccaccagtgcggtttgccgaagaagatggcgcttgaactcttc
aagccgttcatctatcaccgcctcgagcagaccggccactgcaccacgatcaagcaagcc
aaggaactcgtggagcagcaggaaccggtggtttgggacatcctcgaagaggtcatcaaa
gaccacccggtgctcttgaaccgcgccccaacccttcaccgcctcggcatccaggcattc
gagccggtgctggtggaaggcaaggcgatcaagatccacccgctcgtctgcacggcattc
aacgccgacttcgacggcgaccagatggcggtgcacattccgctctctccggaagctcag
atcgaagccagcgtgctcatgctcgcttcgcacaacatcctgtcgcccgcgtcaggccag
ccgatcaccgttcctacccaggacatggtgctcgggatgtactacctgaccaaggcgcgt
ccgggatcgaagggtgaaggccgcgcattcgcgaacattgaagaagtgctgctcgcgaag
gaaatgggcgaagtggaaacgctgaccccgatccgcctgcgctacaccggcgacgtcatg
gacctgaccactgcgtacgacgatcaggacgtgacccacaccgagcccgtgccgttccag
cgtcagtacatcaacaccaccgttggccgcgcgatcctgaacgacaatcttcgccgcgcc
accgcggagatgccgtacatcaacggcttgctgaagaagaagggcattggcaacctggtg
aactacgtgtacctgcgcttcggtctcgagatcacggtgcagatgctcgaccagatcaag
tcgctcggcttccagtacgccacccgttcgggtctctcgatcggcatcgacgacatggtc
atctcgccgaacaaggcgaaggtcgtgaaggaagccgaacagacggtgaactccgtacag
cagcagtacctggacggcgccatcaccaacggcgagcgctacaacaaggttgtcgaaatc
tggtcggccatcaccgaaaaggtcgcggacgaaatgttcggcaacatgcagcaaatggac
aaggccggcgagatcaacccgatttacgtcatggctgactccggcgctcgtggttcgaaa
cagcagatccgtcagctctccggcatgcgcggcttaatggccaagccgtcgggcgaaatc
atcgagacgccgatcacggcgaacttccgtgaaggcctcacggtgttggaatacttcatc
tcgacgcacggcgctcgtaagggccttgcggataccgcgttgaagaccgccgactccggc
tacctcacccgccgtctcgttgacgtggcgcaagacgtcatcatcagcgaatacgattgc
ggcacggtagacggtatctacgtcagctccatcgtcgaatcgggcgagatcatcgagccc
ctgcgcgaccgcgtaattggccgcgtcagcctcgagaagatcaaggactacgaaggcaac
gtcgtggtcgacgtcaaccaggaagtcaccgaagacctcgccaacggcatcgcagccgcg
ggtatcgaacgcgtcaagatccgttcggtgctcacctgcgaatcgaagcgcggcgtttgc
gccctctgttacggacgcaacctcgcctccggccgcctggtcgagctcggtgaagctgtc
ggcgtcatcgccgcacagtccatcggcgaacctggcacccagctcacgatgcgtaccttc
cacatcggtggaaccgcgtcgcgagtctccgagcagtcgcgtttggatgccaagaacaac
ggaaccgctcgcttccacaacctcaccgtcgtccgcgccaaggaaggccaccttgtggtg
atgaaccgcaacggagccatcacggtcatcgacgagaagggccgcgaaaaggaacgttac
gcagtcgtgtacggcgcaaagctccgcgtcgaagacggccagcaggtcaaactcggccag
gtcatggtcgagtgggacccgtacaccttcgcgatcctcacggaaatcggcggcgccgtc
gggttcaaggacctgcacgaaggcctcacgctccacgaggaagtggacgaagtcaccggt
ctctcgcgccacgtggtcatggattcgccggatgaaaaacgtcagccggccatcgtgatc
aagggcgccaagggcaccaagcgttacctcatgccgtcgcgcgctcaccttatggtgctc
gatggtgaagaggtcttcccgggcgatgttctggcgaagatcccgcgcgaaaccaccaag
accaaggacatcaccggcggtctgccgcgtgtcgtggaattgttcgaagcccgcaagccg
cgtgaaacggccgtcatcagcgaaatcgatggcaccgtgaagttcggcgaagtgagcaag
ggtcagcgcaagatctatgtcgttgccgacgatggtaccgagcgcgaatactcggttccc
cgcggcgttcacgtcaacgtgcaggaaggcgaacgcatccaggctggcgaacagctcatg
gatggcccgctcaacccgcacgacattctcgccgtcctcggtgagaagcagttgcagtcc
tacctggtcaacgaaatccaggaagtctaccggctgcagggcgtgaacatcagcgacaag
cacatcgaaacgatcgtgcgccagatgatgcgctgggtgaaggtcgaagacgtgggcgat
actaacttcctgctcgaacagcaggtggataagttccgcttccgcgctgagaacgaagct
gccatcgcttcaggaggacgcccggcaaccggccgtccgctgatgctcggcatcaccaag
gcctcgctctctaccgactccttcatctccgcggcatcgttccaggagaccacgcgtgtg
ctcaccgaagccagcatcaacggcgcggtcgaccacctgcgcggcctcaaggaaaacgtc
atcgtcggccgcttgatcccggccggcactggcatggagtactaccgcaacgtggctctc
tcgcccgaacttgaagcgcaagcgcaacaagttcaggaagaggtacaccaggcgtacgaa
gaagccgaacgcgcgctcgagttgctccgcaacgaaggcgaagacgaaaccggcaacgaa
gaactcgtcgccgaataa
DBGET
integrated database retrieval system
