Luteitalea pratensis: LuPra_00138
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Entry
LuPra_00138 CDS
T04394
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
abac
Luteitalea pratensis
Brite
KEGG Orthology (KO) [BR:
abac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
abac03016
]
LuPra_00138 (rtcB)
Enzymes [BR:
abac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LuPra_00138 (rtcB)
Transfer RNA biogenesis [BR:
abac03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LuPra_00138 (rtcB)
Prokaryotic type
tRNA splicing ligases
LuPra_00138 (rtcB)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF3666
Motif
Other DBs
NCBI-ProteinID:
AMY06974
UniProt:
A0A143PGT3
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All DBs
Position
158217..159629
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AA seq
470 aa
AA seq
DB search
MKNRALVAMGIPAGPCAEEAKRVIAEAHAAGSTVRAAGDTLQSIIASPDAYLDDARYGVL
ASHLKAHQVAAKAFTPRQSVAPYRIWGEHLEPDSVRQLQNACSLPVAVAGALMPDAHVGY
GLPIGGVLATEHAVIPYAVGVDIACRMKMTVLDLPVEALETQRERLVSVLERETCFGIGG
GFRVKRQHEVMDADWRVTPVTADLKDRAWKQLGSSGSGNHFVEFGTLSVSDDAVGLPRGT
YLALLSHSGSRGSGAAVAAHYSTLARRLHPELPQSLAELAWLDLDTEAGQEYWEAMELMG
RYAAANHALIHQYIARALNVEVRLDVENHHNFAWRETHQRPDGTEREVIVHRKGATPAGE
GVVGIIPGSMATPGYVVRGKGSTASLLSAAHGAGRRMSRTQARKTLSWQDAQALLRERQV
TLLSAGLDEVPMVYKDIDEVMAAQQDLVEVLARFDPRLVKMAPSGEPPED
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacagggcattggtggcgatggggatcccggcgggtccctgcgccgaggaagcg
aagcgggtcatcgcggaggcacatgcggcgggcagcaccgtgcgcgcagccggcgacacc
ttgcagtcgatcatcgcgtcaccggacgcgtacctggacgatgcgcgatacggcgtgctg
gcgtcgcacctgaaggcacaccaggtggcggcgaaggcgttcaccccgcgccagtcggtg
gcgccgtatcggatctggggagagcacctcgagccagattccgtgcggcagctgcagaac
gcctgcagcctgccggtggccgtggctggcgcgttgatgcctgacgcgcacgtcggctac
ggcctgccgatcggcggcgtgcttgccaccgagcacgcggtcatcccctatgcggtcggc
gtggacatcgcctgccgcatgaagatgaccgtgctcgacctgccggtcgaggccctggag
acgcagcgcgaacgtctcgtgagtgtgctcgaacgtgagacgtgcttcggcatcggcggc
ggcttcagggtgaagcgtcagcacgaggtgatggatgcggactggcgggtgacgccggtc
accgcggatctcaaggaccgcgcctggaagcagctcgggtccagcggcagcggcaatcac
ttcgtcgagttcggcacgctgtcggtgagcgacgacgcggtgggactgccgcgcggcacg
tacctcgcgctgctcagccactcggggagccgcggcagtggcgcggcagtggcggcgcac
tacagcacgctcgcgcgtcgcctgcacccggagttgccgcagtcgctggcggagctggca
tggctcgacctcgataccgaggccgggcaggaatactgggaggccatggagctgatgggg
cgctacgcggcggccaatcacgcgctcatccaccagtacatcgcgcgggcgctcaacgtg
gaggtgcggctcgatgtcgagaaccaccacaacttcgcgtggcgggagacacaccagcgg
ccggatggcaccgagcgcgaggtcatcgtccatcgcaagggcgcgacgccggcgggtgag
ggtgtcgtcggcatcattccgggatcgatggccacgccggggtacgtggtgcgcggcaag
gggtcgacagcatcgctgctgtcggcggcgcacggcgccggccggcgcatgagccgcacg
caggcgcgcaagacgctgtcgtggcaggacgcgcaggcgctgctgcgcgagcgccaggtc
acgctgctctcggcgggactggacgaggtgccgatggtctacaaggacatcgacgaggtg
atggcggcgcagcaggacctggtcgaggtcctggcgcggttcgatccgcgcctcgtgaag
atggccccaagcggcgagccgcccgaggactga
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